Hi Peter, > I am trying to install netCDF 4.3.0 on a Scientific Linux 6.4 system > with Intel studio c and fortran compilers but have hit a problem, wonder > if you can help resolve this. > > I used the following commands (in a script) to install hdf5-1.8.9, which > appears to have gone through the "make check" without major problems. > > When it comes down to install netCDF 4.3.0, it then complains with the > above error. > > As you can see from the script, I have already exported the environment > variables CPPFLAGS, LDFLAGS, and LD_LIBRARY_PATH to point to the installed > location on hdf5-1.8.9. I have also confirmed the hdf5 installed location > being correct. > > However the fault persists. I have attached the log on this installation. I can't duplicate the problem here, using HDF5-1.8.9, netCDF 4.3.0, and a shell script very similar to yours, except that I use gcc rather than Intel compilers, and I didn't enable fortran or cxx in the HDF libraries (those APIs aren't used by netCDF-4). I note that you repeated the HDF5-1.8.9 library location in the first and third position of your LD_LIBRARY_PATH and LD_RUN_PATH env variables, but that shouldn't cause a problem. Does it all work if you use gcc instead of icc? --Russ > Much grateful if anyone can advise on this. > > Regards, > > Peter Chiu > > STFC Rutherford Appleton Laboratory > UK > echo "Enable intel 64 compilers" > #intel64 > source /opt/intel/bin/compilervars.sh intel64 > > CC=/opt/intel/composer_xe_2013.0.079/bin/intel64/icc > > FC=/opt/intel/composer_xe_2013.0.079/bin/intel64/ifort > > CXX=/opt/intel/composer_xe_2013.0.079/bin/intel64/icpc > > export CC FC CXX > ls $CC $FC $CXX > > echo "Start installing hdf5-1.8.9 with intel" > cd /usr/local/kits/netcdf-src/hdf5-1.8.9 > > make distclean > > ./configure --prefix=/usr/local/hdf5-1.8.9intel --with-szlib=/usr/local/szip \ > --with-zlib=/usr/local/zlib1.2.7 --enable-fortran --enable-cxx > --disable-shared > echo; echo "`date`: make" > make > echo; echo "`date`: make check" > make check > echo; echo "`date`: make check install" > make install > > echo > > echo "Set CPPFLAGS..." > CPPFLAGS='-I/usr/local/hdf5-1.8.9intel/include' > > ls /usr/local/hdf5-1.8.9intel/include /usr/local/szip/include > /usr/local/zlib1.2.7/include > > echo "Set LDFLAGS..." > LDFLAGS='-L/usr/local/hdf5-1.8.9intel/lib' > > ls /opt/intel/composer_xe_2013.0.079/compiler/lib/intel64 > /usr/local/hdf5-1.8.9intel/lib /usr/local/szip/lib /usr/local/zlib1.2.7/lib > export CPPFLAGS LDFLAGS > > LD_LIBRARY_PATH="/usr/local/hdf5-1.8.9intel/lib:/opt/intel/composer_xe_2013.0.079/compiler/lib/intel64:/usr/local/hdf5-1.8.9intel/lib:/usr/local/szip/lib:/usr/local/zlib1.2.7/lib:$LD_LIBRARY_PATH" > LD_RUN_PATH="/usr/local/hdf5-1.8.9intel/lib:/opt/intel/composer_xe_2013.0.079/compiler/lib/intel64:/usr/local/hdf5-1.8.9intel/lib:/usr/local/szip/lib:/usr/local/zlib1.2.7/lib:$LD_RUN_PATH" > > export LD_LIBRARY_PATH LD_RUN_PATH > > cd /usr/local/kits/netcdf-src/netcdf-4.3.0 > > make distclean > > ./configure --prefix=/usr/local/netcdf-4.3.0ifort64-hdf5-1.8.9 > --disable-dap-remote-tests > > make > make check > > > -- > Scanned by iCritical. > > > Russ Rew UCAR Unidata Program address@hidden http://www.unidata.ucar.edu Ticket Details =================== Ticket ID: JZT-105309 Department: Support netCDF Priority: Normal Status: Closed
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