Hi Prentice,
> Writing to you as instructed in error message. 'make check' failed for
> me on the front-end node to my IBM Blue Gene/P system. The front-end
> node is running SUSE 10.4 on a Power6 processor using the gcc 4.1.2
> compiles that are included with SUSE 10.4 A transcript f the 'make
> check' output is below.
I'm assuming the 4.1.2 version you're referring to is for netCDF-4.1.2
(March 2011) rather than gcc.
The error you're seeing in the make check for netcdf-cxx4-4.2 appears to
be caused by calling the ncFile destructor twice, which results in calling
nc_close() twice on the same file handle, resulting in an error caught in
the HDF layer rather than the netCDF layer.
I tried to reproduce this problem using netCDF-4.1.2 linked with
HDF5-1.8.4-patch1 (which would have been the version available in April
2011), but "make check" completed successfully.
So I can't duplicate the problem. I also tried netcdf-cxx4-4.2 linked
with the latest netCDF-4.3.0 built with HDF5-1.8.11, and "make check"
also completed successfully.
I don't have access to SUSE or IBM Blue Gene/P platforms, but just ran
the tests to try to reproduce the problem on a Fedora 14 Linux platform.
All I can suggest is that you try building from source with the most
recent versions of the netCDF C and HDF5 software, in hopes that the
bug you're seeing on your platform was fixed since the older versions
were released.
--Russ
> Let me know if you'd like any additional information about this system.
> I can send you logs of the configure and make output, if you're interested.
>
> $ ./configure --prefix=/usr/local/netcdf-cxx4-4.2 \
>
> CPPFLAGS=-I/usr/local/include \
>
> LDFLAGS=-L/usr/local/lib \
>
> 2>&1 | tee configure.log
>
> $ make 2>&1 | tee make.log
>
> $ make check
>
> Making check in cxx4
>
> make[1]: Entering directory `/scratch/pbisbal/build/netcdf-cxx4-4.2/cxx4'
>
> make test_classic test_group test_dim test_att test_var test_var2 test_type
>
> make[2]: Entering directory `/scratch/pbisbal/build/netcdf-cxx4-4.2/cxx4'
>
> make[2]: `test_classic' is up to date.
>
> make[2]: `test_group' is up to date.
>
> make[2]: `test_dim' is up to date.
>
> make[2]: `test_att' is up to date.
>
> make[2]: `test_var' is up to date.
>
> make[2]: `test_var2' is up to date.
>
> make[2]: `test_type' is up to date.
>
> make[2]: Leaving directory `/scratch/pbisbal/build/netcdf-cxx4-4.2/cxx4'
>
> make check-TESTS
>
> make[2]: Entering directory `/scratch/pbisbal/build/netcdf-cxx4-4.2/cxx4'
>
> Test creation of classic format file ----------- passed
>
> PASS: test_classic
>
> Opening file "firstFile.cdf" with NcFile::replace
>
> Testing addGroup("groupName") ----------- passed
>
> Testing getGroupCount([netCDF::Location]) ----------- passed
>
> Testing getGroups([netCDF::Location]) ----------- passed
>
> Testing getGroups("name",[netCDF::Location]) ----------- passed
>
> Testing getGroup("name",[netCDF::Location]) ----------- passed
>
> Testing getParentGroup() ----------- passed
>
> PASS: test_group
>
> Opening file "firstFile.cdf" with NcFile::replace
>
> Testing addGroup("groupName") -----------
> passed
>
> Testing addDim("dimensionName") -----------
> passed
>
> Testing NcDim::isUnlimited() -----------
> passed
>
> Testing NcDim::isNull() -----------
> passed
>
> Testing NcDim::getSize() -----------
> passed
>
> Testing NcDim::getParentGroup() -----------
> passed
>
> Testing NcDim::getName() -----------
> passed
>
> Testing NcGroup::getDimCount([netCDF::Location]) -----------
> passed
>
> Testing NcGroup::getDims([netCDF::Location]) -----------
> passed
>
> Testing NcGroup::getDims("name",[netCDF::Location]) -----------
> passed
>
> Testing NcGroup::getDim("name",[netCDF::Location]) -----------
> passed
>
> PASS: test_dim
>
> Opening file "firstFile.cdf" with NcFile::replace
>
> Testing addGroup("groupName") -----------
> passed
>
> Testing putAtt("attName","typeName",len,dataValues) -----------
> passed
>
> Testing getAttLength() -----------
> passed
>
> Testing getName() -----------
> passed
>
> Testing getType() -----------
> passed
>
> Testing getParentGroup() -----------
> passed
>
> Testing getValues() -----------
> passed
>
> Testing attCount([netCDF::Location]) -----------
> passed
>
> Testing getAtts([netCDF::Location]) -----------
> passed
>
> Testing getAtt("name",[netCDF::Location]) -----------
> passed
>
> Testing getAtts("name",[netCDF::Location]) -----------
> passed
>
> PASS: test_att
>
> Opening file "firstFile.cdf" with NcFile::replace
>
> Testing addGroup("groupName") -----------
> passed
>
> Testing addDim("dimensionName") -----------
> passed
>
> Testing addVar("varName","typeName","dimName") -----------
> passed
>
> Preparing for tests...
>
> Testing addCount([netCDF::Location]) -----------
> passed
>
> Testing getVars([netCDF::Location]) -----------
> passed
>
> Testing getVar("name",[netCDF::Location]) -----------
> passed
>
> Testing getVars("name",[netCDF::Location]) -----------
> passed
>
> PASS: test_var
>
> i =0 vector=10
>
> i =1 vector=12
>
> i =2 vector=14
>
> i =3 vector=16
>
> i =4 vector=0
>
> i =5 vector=0
>
> i =6 vector=0
>
> i =7 vector=0
>
> i =8 vector=0
>
> i =9 vector=0
>
> 1
>
> fill parameter =13
>
> checksum =0
>
> chunking parameters: chunk mode=0 Chunk sizes=5
>
> endianness =1
>
> shuffleFilterEnabled = 0
>
> deflateFilterEnabled = 1
>
> deflateLevel = 9
>
> parentGroup =/
>
> name =var_2
>
> dimCount =1
>
> dimName =dim1
>
> nctypeName =int
>
> varAtt variable name =var_2
>
> PASS: test_var2
>
> Opening file "firstFile.cdf" with NcFile::replace
>
> Testing addGroup("groupName") -----------
> passed
>
> Testing getName() -----------
> passed
>
> Testing getParentGroup() and isNull() -----------
> passed
>
> Testing getSize() -----------
> passed
>
> Testing getTypeClass() -----------
> passed
>
> Testing getTypeClassName() -----------
> passed
>
> Testing creating new Compound Type -----------
> passed
>
> Testing NcCompoundType::addMember() -----------
> passed
>
> Testing NcCompoundType==>NcType && NcType::getTypeClass() -----------
> passed
>
> Testing compoundClass.getMemberCount() -----------
> passed
>
> Testing NcCompoundType::getMemberDimCount() -----------
> passed
>
> Testing NcCompoundType::getMemberShape(index) -----------
> passed
>
> Testing NcCompoundType::getMember(index).getName() -----------
> passed
>
> Testing NcCompoundType == NcType -----------
> passed
>
> Testing NcCompoundType == NcCompoundType -----------
> passed
>
> Testing creating new Vlen Type -----------
> passed
>
> Testing NcVlenType::getTypeClass() -----------
> passed
>
> Testing NcVlenType::getTypeClassName() -----------
> passed
>
> Testing NcVlenType::getName() -----------
> passed
>
> Testing NcVlenType::getBaseType(); == and != -----------
> passed
>
> Testing NcVlenType constructors -----------
> passed
>
> Testing creating new Enum Type -----------
> passed
>
> Testing NcEnumType::addMember() -----------
> passed
>
> Testing NcEnumType::getBaseType() == and != -----------
> passed
>
> Testing NcEnumType::getMemberCount() -----------
> passed
>
> Testing NcEnumType::getMemberNameFromIndex(index) -----------
> passed
>
> terminate called after throwing an instance of 'netCDF::exceptions::NcHdfErr'
>
> what(): NcHdfErr: An error was reported by the HDF5 layer.
>
> file: ncFile.cpp line:15
>
> Testing NcEnumType::getMemberNameFromValue(index) /bin/sh: line 1:
> 8855 Aborted ${dir}$tst
>
> FAIL: test_type
>
> ================================================
>
> 1 of 7 tests failed
>
> Please report to address@hidden
>
> ================================================
>
> make[2]: *** [check-TESTS] Error 1
>
> make[2]: Leaving directory `/scratch/pbisbal/build/netcdf-cxx4-4.2/cxx4'
>
> make[1]: *** [check-am] Error 2
>
> make[1]: Leaving directory `/scratch/pbisbal/build/netcdf-cxx4-4.2/cxx4'
>
> make: *** [check-recursive] Error 1
>
> --
> Prentice Bisbal
> Manager of Information Technology
> Rutgers Discovery Informatics Institute (RDI2)
> Rutgers University
> http://rdi2.rutgers.edu
>
>
Russ Rew UCAR Unidata Program
address@hidden http://www.unidata.ucar.edu
Ticket Details
===================
Ticket ID: SNP-665192
Department: Support netCDF
Priority: Normal
Status: Closed
NOTE: All email exchanges with Unidata User Support are recorded in the Unidata inquiry tracking system and then made publicly available through the web. If you do not want to have your interactions made available in this way, you must let us know in each email you send to us.