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[netCDF #JQJ-706508]: configuring netcdf-cxx4-4.2

Chris,

> Thank you very much for your quick and helpful reply! I uninstalled
> everything and started from zero:
> 
> zlib (zlib-1.2.7):
> ./configure --prefix=/home/seiler/local
> make check install
> 
> HDF5 (hdf5-1.8.9):
> CFLAGS=-O0 ./configure --with-zlib=/home/seiler/local
> --prefix=/home/seiler/local
> make check install
> [By the way, only with "CFLAGS=-O0" this worked on my Ubuntu LTS]
> 
> netCDF (netcdf-4.2.1.1):
> CPPFLAGS=-I/home/seiler/local/include LDFLAGS=-L/home/seiler/local/lib
> ./configure --prefix=/home/seiler/local
> make check install
> 
> Till here everything worked great: "nc-config --has-nc4" returns "yes". I
> add "/home/seiler/local/bin" as a permanent path in my ".profile". Now:
> 
> netcdf-cxx (netcdf-cxx4-4.2):
> export LD_LIBRARY_PATH=/home/seiler/local/lib
> export C_INCLUDE_PATH=/home/seiler/local/include
> ./configure --prefix=/home/seiler/local
> 
> returns:
> 
> configure: error: NetCDF must be built with netCDF-4 enabled.
> 
> I included the full message below. I don't see what is still going wrong.
> Could you give me another hint? Thank you very much!

The configure script doesn't pay any attention to the "C_INCLUDE_PATH" 
environment variable, as far as I know.  I think you still need to use
CPPFLAGS and LDFLAGS for the netcdf-cxx configure, to tell it where the 
netCDF-4.2.1.1 include file and library were installed.  You don't need to 
export these if they are set on the same command line as the configure 
invocation,
but otherwise you do.  So try something like

  CPPFLAGS=-I/home/seiler/local/include LDFLAGS=-L/home/seiler/local/lib 
./configure --prefix=/home/seiler/local

I'm not sure whether you also need to set LD_LIBRARY_PATH to include 
/home/seiler/local/lib, but it couldn't hurt.

If that doesn't work, we'll need to see the "config.log" file, not just the
output from running configure.

--Russ

> Full Message:
> seiler@seiler: nc-config --has-nc4
> yes
> seiler@seiler: export LD_LIBRARY_PATH=/home/seiler/local/lib
> seiler@seiler: export C_INCLUDE_PATH=/home/seiler/local/include
> seiler@seiler: ./configure --prefix=/home/seiler/local
> configure: netCDF-cxx4 4.2
> checking build system type... x86_64-unknown-linux-gnu
> checking host system type... x86_64-unknown-linux-gnu
> checking target system type... x86_64-unknown-linux-gnu
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for a thread-safe mkdir -p... /bin/mkdir -p
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> configure: checking user options
> checking whether netCDF extra tests should be run (developers only)... no
> checking whether large file (> 2GB) tests should be run... no
> checking whether benchmaks should be run (experimental)... no
> checking where to put large temp files if large file tests are run... .
> configure: finding other utilities
> configure: setting up libtool
> checking how to print strings... printf
> checking for style of include used by make... GNU
> checking for gcc... gcc
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> checking dependency style of gcc... gcc3
> checking for a sed that does not truncate output... /bin/sed
> checking for grep that handles long lines and -e... /bin/grep
> checking for egrep... /bin/grep -E
> checking for fgrep... /bin/grep -F
> checking for ld used by gcc... /usr/bin/ld
> checking if the linker (/usr/bin/ld) is GNU ld... yes
> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
> checking the name lister (/usr/bin/nm -B) interface... BSD nm
> checking whether ln -s works... yes
> checking the maximum length of command line arguments... 1572864
> checking whether the shell understands some XSI constructs... yes
> checking whether the shell understands "+="... yes
> checking for /usr/bin/ld option to reload object files... -r
> checking for objdump... objdump
> checking how to recognize dependent libraries... pass_all
> checking for ar... ar
> checking for strip... strip
> checking for ranlib... ranlib
> checking command to parse /usr/bin/nm -B output from gcc object... ok
> checking how to run the C preprocessor... gcc -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking for dlfcn.h... yes
> checking for objdir... .libs
> checking if gcc supports -fno-rtti -fno-exceptions... no
> checking for gcc option to produce PIC... -fPIC -DPIC
> checking if gcc PIC flag -fPIC -DPIC works... yes
> checking if gcc static flag -static works... yes
> checking if gcc supports -c -o file.o... yes
> checking if gcc supports -c -o file.o... (cached) yes
> checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared
> libraries... yes
> checking whether -lc should be explicitly linked in... no
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... yes
> checking for g++... g++
> checking whether we are using the GNU C++ compiler... yes
> checking whether g++ accepts -g... yes
> checking dependency style of g++... gcc3
> checking how to run the C++ preprocessor... g++ -E
> checking for ld used by g++... /usr/bin/ld -m elf_x86_64
> checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
> checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared
> libraries... yes
> checking for g++ option to produce PIC... -fPIC -DPIC
> checking if g++ PIC flag -fPIC -DPIC works... yes
> checking if g++ static flag -static works... yes
> checking if g++ supports -c -o file.o... yes
> checking if g++ supports -c -o file.o... (cached) yes
> checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared
> libraries... yes
> checking dynamic linker characteristics... (cached) GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking for gawk... (cached) gawk
> checking for gcc... (cached) gcc
> checking whether we are using the GNU C compiler... (cached) yes
> checking whether gcc accepts -g... (cached) yes
> checking for gcc option to accept ISO C89... (cached) none needed
> checking dependency style of gcc... (cached) gcc3
> checking how to run the C preprocessor... gcc -E
> checking whether ln -s works... yes
> checking whether make sets $(MAKE)... (cached) yes
> checking stddef.h usability... yes
> checking stddef.h presence... yes
> checking for stddef.h... yes
> checking for stdlib.h... (cached) yes
> checking for string.h... (cached) yes
> checking for stdbool.h that conforms to C99... yes
> checking for _Bool... yes
> checking for size_t... yes
> checking for ptrdiff_t... yes
> checking for stdlib.h... (cached) yes
> checking for GNU libc compatible malloc... yes
> checking for special C compiler options needed for large files... no
> checking for _FILE_OFFSET_BITS value needed for large files... no
> checking netcdf.h usability... yes
> checking netcdf.h presence... yes
> checking for netcdf.h... yes
> checking for library containing nc_create... no
> checking for nc_def_opaque... no
> checking for nccreate... no
> checking for nc_set_log_level... no
> checking for oc_open... no
> checking for nc_use_parallel_enabled... no
> configure: error: NetCDF must be built with netCDF-4 enabled.
> 
> address@hidden> wrote:
> 
> > Hi Chris,
> >
> > > I am trying to compile netcdf-cxx4-4.2.tar.gz and receive the error
> > > message:
> > >
> > > configure: error: NetCDF must be built with netCDF-4 enabled.
> > >
> > > History: I first compile zlib and hdf5 and then compile
> > netcdf-4.0.tar.gz,
> > > enableing netCDF4 as follows:
> > >
> > > ./configure --enable-netcdf-4 --with-zlib=/usr/local/zlib
> > --with-hdf5=/usr/lib/
> > > make check
> > > sudo make install
> > >
> > > All Checks are fine. I then try to compile netcdf-cxx4-4.2.tar.gz
> > > starting with "./configure" and receive the output included below. My
> > > NetCDF libraries are located in /usr/local. I think the compiler is fine
> > > with this path, given that it does find "netcdf.h" which is located in
> > > "/usr/local/include". Can you give me a hint on how configure netCDF-cxx4
> > > 4.2 correctly?
> >
> > Assuming you built the netCDF-4 and HDF5 libraries as shared libraries,
> > which
> > would be the default unless you configured with "--disable-shared", you
> > should add the path to the shared libraries to your LD_LIBRARY_PATH
> > environment variable before running the configure script.
> >
> > For example
> >
> >   LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/usr/local/lib
> >   export LD_LIBRARY_PATH
> >   ./configure ...
> >
> > If this gets you further but you still have problems, I recommend using
> > the latest version of the netCDF C library, 4.2.1.1, and installing that
> > before trying to build the C++ library.
> >
> > The configure script in version 4.2.1.1 no longer supports the
> > "--with-hdf5="
> > option, so you need to specify where you installed the HDF5 library using
> > the
> > CPPFLAGS and LDFLAGS environment variables, as described here:
> >
> >   http://www.unidata.ucar.edu/netcdf/docs/build_default.html
> >
> > For example, you could use
> >
> >   CPPFLAGS=-I/usr/local/include LDFLAGS=-L/usr/local/lib ./configure
> >
> > --Russ
> >
> > > ###
> > > configure: netCDF-cxx4 4.2
> > > checking build system type... x86_64-unknown-linux-gnu
> > > checking host system type... x86_64-unknown-linux-gnu
> > > checking target system type... x86_64-unknown-linux-gnu
> > > checking for a BSD-compatible install... /usr/bin/install -c
> > > checking whether build environment is sane... yes
> > > checking for a thread-safe mkdir -p... /bin/mkdir -p
> > > checking for gawk... gawk
> > > checking whether make sets $(MAKE)... yes
> > > configure: checking user options
> > > checking whether netCDF extra tests should be run (developers only)... no
> > > checking whether large file (> 2GB) tests should be run... no
> > > checking whether benchmaks should be run (experimental)... no
> > > checking where to put large temp files if large file tests are run... .
> > > configure: finding other utilities
> > > configure: setting up libtool
> > > checking how to print strings... printf
> > > checking for style of include used by make... GNU
> > > checking for gcc... gcc
> > > checking whether the C compiler works... yes
> > > checking for C compiler default output file name... a.out
> > > checking for suffix of executables...
> > > checking whether we are cross compiling... no
> > > checking for suffix of object files... o
> > > checking whether we are using the GNU C compiler... yes
> > > checking whether gcc accepts -g... yes
> > > checking for gcc option to accept ISO C89... none needed
> > > checking dependency style of gcc... gcc3
> > > checking for a sed that does not truncate output... /bin/sed
> > > checking for grep that handles long lines and -e... /bin/grep
> > > checking for egrep... /bin/grep -E
> > > checking for fgrep... /bin/grep -F
> > > checking for ld used by gcc... /usr/bin/ld
> > > checking if the linker (/usr/bin/ld) is GNU ld... yes
> > > checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
> > > checking the name lister (/usr/bin/nm -B) interface... BSD nm
> > > checking whether ln -s works... yes
> > > checking the maximum length of command line arguments... 1572864
> > > checking whether the shell understands some XSI constructs... yes
> > > checking whether the shell understands "+="... yes
> > > checking for /usr/bin/ld option to reload object files... -r
> > > checking for objdump... objdump
> > > checking how to recognize dependent libraries... pass_all
> > > checking for ar... ar
> > > checking for strip... strip
> > > checking for ranlib... ranlib
> > > checking command to parse /usr/bin/nm -B output from gcc object... ok
> > > checking how to run the C preprocessor... gcc -E
> > > checking for ANSI C header files... yes
> > > checking for sys/types.h... yes
> > > checking for sys/stat.h... yes
> > > checking for stdlib.h... yes
> > > checking for string.h... yes
> > > checking for memory.h... yes
> > > checking for strings.h... yes
> > > checking for inttypes.h... yes
> > > checking for stdint.h... yes
> > > checking for unistd.h... yes
> > > checking for dlfcn.h... yes
> > > checking for objdir... .libs
> > > checking if gcc supports -fno-rtti -fno-exceptions... no
> > > checking for gcc option to produce PIC... -fPIC -DPIC
> > > checking if gcc PIC flag -fPIC -DPIC works... yes
> > > checking if gcc static flag -static works... yes
> > > checking if gcc supports -c -o file.o... yes
> > > checking if gcc supports -c -o file.o... (cached) yes
> > > checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports
> > shared libraries... yes
> > > checking whether -lc should be explicitly linked in... no
> > > checking dynamic linker characteristics... GNU/Linux ld.so
> > > checking how to hardcode library paths into programs... immediate
> > > checking whether stripping libraries is possible... yes
> > > checking if libtool supports shared libraries... yes
> > > checking whether to build shared libraries... yes
> > > checking whether to build static libraries... yes
> > > checking for g++... g++
> > > checking whether we are using the GNU C++ compiler... yes
> > > checking whether g++ accepts -g... yes
> > > checking dependency style of g++... gcc3
> > > checking how to run the C++ preprocessor... g++ -E
> > > checking for ld used by g++... /usr/bin/ld -m elf_x86_64
> > > checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
> > > checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports
> > shared libraries... yes
> > > checking for g++ option to produce PIC... -fPIC -DPIC
> > > checking if g++ PIC flag -fPIC -DPIC works... yes
> > > checking if g++ static flag -static works... yes
> > > checking if g++ supports -c -o file.o... yes
> > > checking if g++ supports -c -o file.o... (cached) yes
> > > checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports
> > shared libraries... yes
> > > checking dynamic linker characteristics... (cached) GNU/Linux ld.so
> > > checking how to hardcode library paths into programs... immediate
> > > checking for gawk... (cached) gawk
> > > checking for gcc... (cached) gcc
> > > checking whether we are using the GNU C compiler... (cached) yes
> > > checking whether gcc accepts -g... (cached) yes
> > > checking for gcc option to accept ISO C89... (cached) none needed
> > > checking dependency style of gcc... (cached) gcc3
> > > checking how to run the C preprocessor... gcc -E
> > > checking whether ln -s works... yes
> > > checking whether make sets $(MAKE)... (cached) yes
> > > checking stddef.h usability... yes
> > > checking stddef.h presence... yes
> > > checking for stddef.h... yes
> > > checking for stdlib.h... (cached) yes
> > > checking for string.h... (cached) yes
> > > checking for stdbool.h that conforms to C99... yes
> > > checking for _Bool... yes
> > > checking for size_t... yes
> > > checking for ptrdiff_t... yes
> > > checking for stdlib.h... (cached) yes
> > > checking for GNU libc compatible malloc... yes
> > > checking for special C compiler options needed for large files... no
> > > checking for _FILE_OFFSET_BITS value needed for large files... no
> > > checking netcdf.h usability... yes
> > > checking netcdf.h presence... yes
> > > checking for netcdf.h... yes
> > > checking for library containing nc_create... no
> > > checking for nc_def_opaque... no
> > > checking for nccreate... no
> > > checking for nc_set_log_level... no
> > > checking for oc_open... no
> > > checking for nc_use_parallel_enabled... no
> > > configure: error: NetCDF must be built with netCDF-4 enabled.
> > >
> > >
> > Russ Rew                                         UCAR Unidata Program
> > address@hidden                      http://www.unidata.ucar.edu
> >
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: JQJ-706508
> > Department: Support netCDF
> > Priority: Normal
> > Status: Closed
> >
> >
> 
> 
> --
> Christian Seiler
> Mansholtlaan 20
> 6708 PA Wageningen
> The Netherlands
> ++31(0)686153270
> address@hidden
> 
> 
Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: JQJ-706508
Department: Support netCDF
Priority: Normal
Status: Closed