Jonathan, > After downloading and successfully building/installing: > > zlib-1.2.6 > hdf5-1.8.8 > netcdf-4.2 (netcdf library version 4.2 of Mar 27 2012 14:46:42 $) > > Our user (Andy Loughe) was still seeing the large, varying file IDs while > running his script that utilizes netcdf-perl (as referenced in the ticket > he submitted, ie the subject line). We determined that > re-compiling/building netcdf-perl was the next step in trying to correct > that issue. Unfortunately, I have run into issues doing the > re-compile/build. I would appreciate some input in rectifying! > > thanks! > Jonathan > Jonathan.B.Auerbach > Systems Administrator > NOAA/ESRL/GSD/ACE > > > Per the INSTALL file, here are the requested "support" items (it dies at *make > test*): > > A. Linux booboo 2.6.18-274.17.1.el5xen #1 SMP Wed Jan 4 23:05:19 EST 2012 > x86_64 x86_64 x86_64 GNU/Linux > > B. VERSION = 1.2.4 > > C. /usr/bin/cc > > D. address@hidden src]# cat configure.log > creating cache ./config.cache > checking for manual-page index command... > checking for perl... perl > checking for perl manual page directory... /usr/share/man > checking for value of perl POLLUTE variable... 0 > checking for neqn... neqn > checking for tbl... tbl > checking for c89... c89 > checking type of operating system... linux > checking for tar flags... -chof > checking for netCDF header-file... -I/usr/local/include > checking for netCDF library... -L/usr/local/lib -lnetcdf -L/usr/local/lib > -lhdf5 -lhdf5_hl > checking for package version... 1.2 > updating cache ./config.cache > creating ./config.status > creating Makefile > creating perl/Makefile.PL > creating port/master.mk > creating port/Makefile > expanding `include's in file `Makefile' > expanding `include's in file `perl/Makefile.PL' > expanding `include's in file `port/master.mk' > expanding `include's in file `port/Makefile' The output of the "make test" command contained this: > making `test' in directory /root/netcdf-perl-1.2.4/src/perl > > make: Entering directory `/root/netcdf-perl-1.2.4/src/perl' > cp NetCDF.pm blib/lib/NetCDF.pm > AutoSplitting blib/lib/NetCDF.pm (blib/lib/auto/NetCDF) > PERL_DL_NONLAZY=1 /usr/bin/perl "-Iblib/lib" "-Iblib/arch" test.pl > Can't load 'blib/arch/auto/NetCDF/NetCDF.so' for module NetCDF: > libhdf5.so.6: cannot open shared object file: No such file or directory at > /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/DynaLoader.pm line 230. > at test.pl line 5 Does the file "/usr/local/lib/libhdf5.so.6" exist? If not, then you'll have to set the environment variable LD_NETCDF to reference it (as well as the netCDF library) and rebuild the netCDF-Perl package after executing a "make distclean". Regards, Steve Emmerson Ticket Details =================== Ticket ID: DPK-277567 Department: Support netCDF Perl Priority: High Status: Closed
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