Melanie, > Thanks, that was the issue. Sorry about that, it's something I should have > realised. > > However, I'm now getting a second error: > > HDF5-DIAG: Error detected in HDF5 (1.8.8) thread 0: > #000: H5Z.c line 1376 in H5Zget_filter_info(): Filter not defined > major: Invalid arguments to routine > minor: Bad value > #001: H5Z.c line 1019 in H5Z_find(): required filter is not registered > major: Data filters > minor: Object not found > *** Checking HDF5 deflate filter setting and getting...Sorry! Unexpected > result, tst_h_vars.c, line: 230 > FAIL: tst_h_vars > > Currently googling for solutions but haven't found anything conclusive so far. It's not finding zlib. You need to have configured HDF5-1.8.8 with the --with-zlib= option to tell it where to find zlib. If you build HDF5 again with zlib, then netCDF-4.1.3 should build OK with that HDF5 library ... --Russ > On 2012-03-12, at 6:20 PM, Unidata netCDF Support wrote: > > > Hi Melanie, > > > > I think the problem may be that you are trying to execute "make check > > install" > > using sudo, and the setting of LD_LIBRARY_PATH is not inherited by the root > > user through sudo, as this would be a security problem. > > > > Try running "make check" as the same user who set LD_LIBRARY_PATH, but not > > using sudo. Then, if that works, you can run "sudo make install", which > > will not need LD_LIBRARY_PATH set to /usr/local/lib to run correctly. > > > > In order to successfully run "make check" as a normal user after having > > tried to run it with "sudo", you may need to first run "sudo make clean" > > or start over from the compressed tar file. > > > > --Russ > > > >> I'm installing netcdf on Ubuntu 11.10. I've installed zlib and hdf5 > >> successfully and now I'm attempting to install netcdf4.1.3. My configure > >> command is: > >> sudo CPPFLAGS=-I/usr/local/include LDFLAGS=-L/usr/local/lib ./configure > >> --prefix=/usr/local --enable-netcdf-4 --enable-shared > >> I've set $LD_LIBRARY_PATH and $LD_RUN_PATH to /usr/local/lib. The > >> permissions are set correctly on the library files located in > >> /usr/local/lib. > >> However, when I run 'sudo make check install', I get the following error: > >> > >> make check-TESTS > >> make: Entering directory `/home/mcooke/Downloads/netcdf-4.1.3/h5_test' > >> ./tst_h_files: error while loading shared libraries: libhdf5.so.7: > >> cannot open shared object file: No such file or directory > >> FAIL: tst_h_files > >> ./tst_h_files2: error while loading shared libraries: libhdf5.so.7: > >> cannot open shared object file: No such file or directory > >> FAIL: tst_h_files2 > >> ./tst_h_files4: error while loading shared libraries: libhdf5.so.7: > >> cannot open shared object file: No such file or directory > >> FAIL: tst_h_files4 > >> ./tst_h_atts: error while loading shared libraries: libhdf5_hl.so.7: > >> cannot open shared object file: No such file or directory > >> FAIL: tst_h_atts > >> > >> *** Checking HDF5 attribute functions some more. > >> *** Tests successful! > >> PASS: tst_h_atts3 > >> > >> *** Checking HDF5 attribute functions for memory leaks. > >> *** Tests successful! > >> PASS: tst_h_atts4 > >> ./tst_h_vars: error while loading shared libraries: libhdf5.so.7: cannot > >> open shared object file: No such file or directory > >> [more similar failure messages] > >> FAIL: tst_h_dimscales4 > >> ================================================ > >> 24 of 26 tests failed > >> Please report to address@hidden > >> ================================================ > >> > >> I searched for this problem and found this support thread: > >> from > >> http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg10724.html > >> to > >> http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg10790.html > >> > >> When I try cd man4; make Doxyfile.stamp, I get an error: > >> make: *** No rule to make target `Doxyfile.stamp'. Stop. > >> > >> > >> Any help would be appreciated. > >> Thanks, > >> -Melanie > >> > >> > > > > Russ Rew UCAR Unidata Program > > address@hidden http://www.unidata.ucar.edu > > > > > > > > Ticket Details > > =================== > > Ticket ID: FUL-645927 > > Department: Support netCDF > > Priority: Normal > > Status: Closed > > > > Russ Rew UCAR Unidata Program address@hidden http://www.unidata.ucar.edu Ticket Details =================== Ticket ID: FUL-645927 Department: Support netCDF Priority: Normal Status: Closed
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