You can give it a try, although I am not sure why they didn't get installed in the first place. The output from `make check` shows that the tests passed just fine with the libnetcdff lib, so you should be in good shape to copy them to /usr/local/lib. Let me know how that goes, Sean > Yes. Should I just copy them over manually? > > Francis > > On 2011-07-28, at 3:01 PM, Unidata netCDF Support wrote: > > > Interesting. What libnetcdf* files do you have in /usr/local/lib? Do you > > see libnetcdff within your netcdf build directory > > (<build-dir>/fortran/.libs/)? > > > >> Hello, > >> > >> I decided to do the make install and it seemed to work. > >> > >> The serial code still works. So I haven't lost that. > >> > > > > > >> My make file has the line that you suggested. However, when I try and > >> make all I get that each file compiles ok (better than before) but it > >> cannot find -lnetcdff. Indeed, it's not in my /usr/local/lib. > >> > >> ld: library not found for -lnetcdff > >> collect2: ld returned 1 exit status > >> make: *** [rsw] Error 1 > >> > >> When I configured netcdfi I told it to use a fortran compiler and it seems > >> to know that. Any ideas why it didn't build the library? > >> > >> Francis > >> > >> On 2011-07-28, at 2:19 PM, Unidata netCDF Support wrote: > >> > >>> Greetings Francis, > >>> > >>> I looked through your logs and everything looks ok. You could always do a > >>> `make clean` and start from the beginning, but this time set the > >>> --prefix=/where/ever/you/want when running netcdf config to install the > >>> libs in a different directory. Just be sure to update > >>> > >>> NETCDF = -L/usr/local/lib -lnetcdff -lnetcdf -L/sw/lib -lcurl > >>> > >>> to point to the custom install directory rather than /usr/local/lib. > >>> > >>> Let me know how it goes, > >>> > >>> Sean > >>> > >>> > >>>> Hello Sean, > >>>> > >>>> I am a bit hesitate to make install the netcdf for fear that it won't > >>>> work serially anymore. I thought I could compile some netcdf code using > >>>> these libraries but 1) I'm not sure where they are and 2) because I'm > >>>> using fftw3 that is in /usr/local/lib, there's the old netcdf that is > >>>> also there and I'm not sure how to tell it to use one or the other. > >>>> > >>>> Any advice? > >>>> > >>>> Francis > >>>> > >>>> On 2011-07-27, at 2:41 PM, Unidata netCDF Support wrote: > >>>> > >>>>> Francis, > >>>>> > >>>>> Try re-running config, but add lt_cv_ld_force_load=no like this: > >>>>> > >>>>> lt_cv_ld_force_load=no ./configure <whatever options you added> > >>>>> > >>>>> To log make and make check, do the following: > >>>>> > >>>>> make >& make.out& > >>>>> > >>>>> Then, to watch things progress, you can do: > >>>>> > >>>>> tail -f make.out > >>>>> > >>>>> You can do the exact same thing for make check (just be sure to rename > >>>>> make.out to make_check.out or something like that). > >>>>> > >>>>> Make sure to do a `make clean` before trying the above steps. > >>>>> > >>>>> Cheers! > >>>>> > >>>>> Sean > >>>>> > >>>>> > >>>>>> Hello Sean, > >>>>>> > >>>>>> Here is a copy of my config.log. I don't see where the make and make > >>>>>> check were stored. If you tell me I'll send them. Otherwise, I'll > >>>>>> redo the make and make check and send you the output. > >>>>>> > >>>>>> Thanks, > >>>>>> Francis > >>>>>> > >>>>>> > >>>>>> > >>>>>> > >>>>>> > >>>>>> On 2011-07-27, at 1:15 PM, Unidata netCDF Support wrote: > >>>>>> > >>>>>>> Francis, > >>>>>>> > >>>>>>> Would you mind sending me the configure, make, and make check logs > >>>>>>> from your desktop build? > >>>>>>> > >>>>>>> Thanks! > >>>>>>> > >>>>>>> Sean > >>>>>>> > >>>>>>>> Hello Sean, > >>>>>>>> > >>>>>>>> Thanks for the advice. I'm testing this out on a MacPro and > >>>>>>>> MacBook Pro. > >>>>>>>> > >>>>>>>> On my laptop it compiles fine, thanks! The nc-config didn't say > >>>>>>>> that but now I know better. > >>>>>>>> > >>>>>>>> On my desktop it no longer complains about not finding netcdf.mod > >>>>>>>> (that's progress) but now it doesn't find netcdff. When I look in > >>>>>>>> usr/local/lib I see netcdf and netcdf_c++ but no netcdff. Maybe I > >>>>>>>> needed to do something to include it when I built netcdf 4.1.1? > >>>>>>>> > >>>>>>>> Cheers, > >>>>>>>> Francis > >>>>>>>> > >>>>>>>> On 2011-07-27, at 11:48 AM, Unidata netCDF Support wrote: > >>>>>>>> > >>>>>>>>> Greetings Francis! > >>>>>>>>> > >>>>>>>>> You seem to be missing the netcdf fortran library (-lnetcdff) in > >>>>>>>>> your NETCDF variable. It should be something like: > >>>>>>>>> > >>>>>>>>> NETCDF = -L/usr/local/lib -lnetcdff -lnetcdf -L/sw/lib -lcurl > >>>>>>>>> > >>>>>>>>> If you need to see what lib flags you should use, check out the > >>>>>>>>> program nc-config: > >>>>>>>>> > >>>>>>>>> nc-config --flibs > >>>>>>>>> > >>>>>>>>> There are all kinds of goodies that can be found using > >>>>>>>>> nc-config...check out > >>>>>>>>> > >>>>>>>>> nc-config --help > >>>>>>>>> > >>>>>>>>> for more info. > >>>>>>>>> > >>>>>>>>> Please let me know if adding -lnetcdff works for you. > >>>>>>>>> > >>>>>>>>> Cheers! > >>>>>>>>> > >>>>>>>>> Sean > >>>>>>>>> > >>>>>>>>>> Hello, > >>>>>>>>>> > >>>>>>>>>> Since my first email I've made some progress, but I'm still having > >>>>>>>>>> some difficulty. > >>>>>>>>>> > >>>>>>>>>> Since last I wrote I have figured out that netcdf does seem to be > >>>>>>>>>> installed correctly because I can run some f90 programs that call > >>>>>>>>>> netcdf. At least in serial. > >>>>>>>>>> > >>>>>>>>>> For my serial problem my makefile looks like > >>>>>>>>>> > >>>>>>>>>> FC = /sw/bin/gfortran > >>>>>>>>>> FFLAGS = -g -O2 -I/usr/local/include > >>>>>>>>>> MATH = -lm > >>>>>>>>>> NETCDF = -L/usr/local/lib -lnetcdf -L/sw/lib -lcurl > >>>>>>>>>> FFT = -L/usr/local/lib -lfftw3 > >>>>>>>>>> > >>>>>>>>>> all:rsw > >>>>>>>>>> > >>>>>>>>>> %.o: %.f90 > >>>>>>>>>> $(FC) $(FFLAGS) -c $< > >>>>>>>>>> > >>>>>>>>>> rsw: $(OBJ) > >>>>>>>>>> $(FC) $(FFLAGS) -o rsw_nl.out $(OBJ) $(MATH) $(FFT) $(NETCDF) > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> My MPI version is very similar and looks like this, > >>>>>>>>>> > >>>>>>>>>> FC = /usr/local/bin/mpif90 > >>>>>>>>>> FFLAGS = -g -O2 -I/usr/local/include > >>>>>>>>>> MATH = -lm > >>>>>>>>>> NETCDF = -L/usr/local/lib -lnetcdf -L/sw/lib -lcurl > >>>>>>>>>> FFT = -L/usr/local/lib -lfftw3 > >>>>>>>>>> MPI = -L/usr/local/lib -lmpi > >>>>>>>>>> > >>>>>>>>>> all:rsw > >>>>>>>>>> > >>>>>>>>>> %.o: %.f90 > >>>>>>>>>> $(FC) $(FFLAGS) $(NETCDF) -c $< > >>>>>>>>>> > >>>>>>>>>> rsw: $(OBJ) > >>>>>>>>>> $(FC) $(FFLAGS) -o rsw_nl.out $(OBJ) $(MATH) $(FFT) $(MPI) > >>>>>>>>>> $(NETCDF) > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> Unfortunately in this case it cannot find netcdf.mod > >>>>>>>>>> > >>>>>>>>>> /usr/local/bin/mpif90 -g -O2 -I/usr/local/include -L/usr/local/lib > >>>>>>>>>> -lnetcdf -L/sw/lib -lcurl -c save_fields.f90 > >>>>>>>>>> save_fields.f90:6.12: > >>>>>>>>>> > >>>>>>>>>> USE netcdf > >>>>>>>>>> 1 > >>>>>>>>>> Fatal Error: Wrong module version '0' (expected '6') for file > >>>>>>>>>> 'netcdf.mod' opened at (1) > >>>>>>>>>> make: *** [save_fields.o] Error 1 > >>>>>>>>>> > >>>>>>>>>> even though there is a local copy of it in the directory, > >>>>>>>>>> > >>>>>>>>>> Do you have any ideas why I can use netcdf in serial but not in > >>>>>>>>>> parallel? I've tried restructuring my makefile but to no avail. > >>>>>>>>>> > >>>>>>>>>> Thanks, > >>>>>>>>>> Francis > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> On 2011-07-20, at 10:54 AM, Unidata netCDF Support wrote: > >>>>>>>>>> > >>>>>>>>>>> > >>>>>>>>>>> Francis Poulin, > >>>>>>>>>>> > >>>>>>>>>>> Your Ticket has been received, and a Unidata staff member will > >>>>>>>>>>> review it and reply accordingly. Listed below are details of this > >>>>>>>>>>> new Ticket. Please make sure the Ticket ID remains in the > >>>>>>>>>>> Subject: line on all correspondence related to this Ticket. > >>>>>>>>>>> > >>>>>>>>>>> Ticket ID: XPO-276613 > >>>>>>>>>>> Subject: compiling f90 and including netcdf > >>>>>>>>>>> Department: Support netCDF > >>>>>>>>>>> Priority: Normal > >>>>>>>>>>> Status: Open > >>>>>>>>>>> > >>>>>>>>>>> > >>>>>>>>>>> > >>>>>>>>>>> The NetCDF libraries are developed at the Unidata Program > >>>>>>>>>>> Center/UCAR, > >>>>>>>>>>> in Boulder, Colorado; we are funded primarily by the U.S. National > >>>>>>>>>>> Science Foundation. > >>>>>>>>>>> > >>>>>>>>>>> All support requests are handled by the development team; no > >>>>>>>>>>> dedicated support staff are funded at this time. For this reason > >>>>>>>>>>> we cannot guarantee response times, nor can we resolve every > >>>>>>>>>>> support > >>>>>>>>>>> issue, although we do our best to respond within 72 hours. > >>>>>>>>>>> > >>>>>>>>>>> It is in the nature of support requests that the same question is > >>>>>>>>>>> asked many times. We urge you to search the support archives for > >>>>>>>>>>> material relating to your support inquiry: > >>>>>>>>>>> > >>>>>>>>>>> http://www.unidata.ucar.edu/search.jsp?support&netcdf > >>>>>>>>>>> > >>>>>>>>>>> If you are having trouble building netCDF, please take a look at > >>>>>>>>>>> the > >>>>>>>>>>> "Build Troubleshooter" section of the netCDF home page: > >>>>>>>>>>> > >>>>>>>>>>> http://www.unidata.ucar.edu/software/netcdf/ > >>>>>>>>>>> > >>>>>>>>>>> Windows users should see the FAQ list: > >>>>>>>>>>> > >>>>>>>>>>> http://www.unidata.ucar.edu/software/netcdf/docs/faq.html#windows_netcdf4 > >>>>>>>>>>> > >>>>>>>>>>> Complete documentation (including a tutorial, and sample programs > >>>>>>>>>>> in > >>>>>>>>>>> C, Fortran, Java, and other programming languages) can be found > >>>>>>>>>>> on the > >>>>>>>>>>> netCDF Documentation page: > >>>>>>>>>>> > >>>>>>>>>>> http://www.unidata.ucar.edu/software/netcdf/docs/ > >>>>>>>>>>> > >>>>>>>>>>> If you resolve your issue through one of these methods, please > >>>>>>>>>>> send a > >>>>>>>>>>> reply to this email letting us know that you no longer require > >>>>>>>>>>> assistance. This will help us spend more time on netCDF > >>>>>>>>>>> development. > >>>>>>>>>>> > >>>>>>>>>>> Best regards, > >>>>>>>>>>> > >>>>>>>>>>> Unidata User Support > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>> > >>>>>>>>> > >>>>>>>>> Ticket Details > >>>>>>>>> =================== > >>>>>>>>> Ticket ID: XPO-276613 > >>>>>>>>> Department: Support netCDF > >>>>>>>>> Priority: High > >>>>>>>>> Status: Open > >>>>>>>> > >>>>>>>> > >>>>>>> > >>>>>>> > >>>>>>> Ticket Details > >>>>>>> =================== > >>>>>>> Ticket ID: XPO-276613 > >>>>>>> Department: Support netCDF > >>>>>>> Priority: High > >>>>>>> Status: Open > >>>>>> > >>>>>> > >>>>>> > >>>>> > >>>>> > >>>>> Ticket Details > >>>>> =================== > >>>>> Ticket ID: XPO-276613 > >>>>> Department: Support netCDF > >>>>> Priority: High > >>>>> Status: Open > >>>> > >>>> > >>> > >>> > >>> Ticket Details > >>> =================== > >>> Ticket ID: XPO-276613 > >>> Department: Support netCDF > >>> Priority: High > >>> Status: Open > >> > >> > > > > > > Ticket Details > > =================== > > Ticket ID: XPO-276613 > > Department: Support netCDF > > Priority: High > > Status: Open > > Ticket Details =================== Ticket ID: XPO-276613 Department: Support netCDF Priority: High Status: Open
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