Hi Mark, Thanks for reporting the fix you found. We'll file your response where it can be found by others searching for a workaround for this problem. --Russ > I resolved this issue by removing the "-static" option in the > environmental flags (also took out "-no-prec-dev"). > (instead of what Intel talks about > http://www.intel.com/support/performancetools/sb/CS-027812.htm) > This enables the configuration to look for either static or shared > libraries. > And I needed to force netcdf 4.1 to look in the /usr/lib64 directory for > system libraries on my 64-bit linux machine (otherwise it only looks in > /usr/lib). > > I used: > CFLAGS=-O3 -xT -ip > CXXFLAGS=-O3 -xT -ip > FFLAGS=-O3 -xT -ip > LDFLAGS=-L/usr/lib64 > > FORTRAN=ifort > F77=ifort > FC=ifort > FORTC=ifort > CC=icc > F90=ifort > F9X=ifort > CXX=icpc > CPP=icc -E > CXXCPP=icpc -E > > ./configure --with-hdf5=/usr/local/hdf5 --with-zlib=/usr --enable-hdf4 > --with-hdf4=/usr/local --disable-dap > > > mark > > > Hello netCDF Support, > > I'm trying to install netCDF 4.1.1 with both hdf4 and hdf5. But it won't > get past checking for hdf5 libraries even though they exist. It finds > the hdf5 include files but not the hdf5 libraries. I get: > "configure: error: Can't find or link to the hdf5 library. Configure > with --disable-netcdf-4 or see config.log for errors." > > It looks like it'll configure if I don't enable-hdf4, but I need both > hdf4 and 5. > > And I noticed that where it fails, "checking for H5Fflush in -lhdf5", it > can't find compatible libm.a, libz.a. It seems to be only looking in > /usr/lib instead of /usr/lib64. And it can't find -ljpeg even though > /usr/lib64/libjpeg.so exists. > > ld: skipping incompatible /usr/lib/libm.a when searching for -lm > ld: skipping incompatible /usr/lib/libz.a when searching for -lz > ld: cannot find -ljpeg > > I've attached the config.log file. > > Here's my setup: > CentOS release 5.5 64-bit > Linux 2.6.18-194.26.1.el5 #1 SMP x86_64 x86_64 x86_64 GNU/Linux > Processors - Intel(R) Xeon(R) CPU E5345 @ 2.33GHz > > HDF4 - version hdf-4.2.5 (located in /usr/local) > ./configure --disable-netcdf > HDF5 - version hdf5-1.8.5-patch1 (located in /usr/local/hdf5) > ./configure --prefix=/usr/local/hdf5 --enable-fortran --enable-cxx > --with-zlib=/usr > > ifort v11.1 - Intel Fortran 64 v11.1 Build 20100414 (l_cprof_p_11.1.072) > icc v11.1 - Intel C 64 v11.1 Build 20100414 (l_cproc_p_11.1.072) > zlib-1.2.3-3.x86_64 > libjpeg-6b-37.x86_64 > > # based on > http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-netcdf-with-the-intel-compilers/ > setenv FORTRAN ifort > setenv F77 ifort > setenv FC ifort > setenv FORTC ifort > setenv F90 ifort > setenv F9X ifort > setenv CC icc > setenv CXX icpc > setenv CFLAGS '-O3 -xT -ip -no-prec-div -static' > setenv CXXFLAGS '-O3 -xT -ip -no-prec-div -static' > setenv FFLAGS '-O3 -xT -ip -no-prec-div -static' > setenv CPP 'icc -E' > setenv CXXCPP 'icpc -E' > > My configure statement: > ./configure --with-hdf5=/usr/local/hdf5 --with-zlib=/usr --enable-hdf4 > --with-hdf4=/usr/local > > Am I using incorrect flags? Is netCDF 4.1.1 compatible with hdf-4.2.5 > and hdf5-1.8.5-patch1? Russ Rew UCAR Unidata Program address@hidden http://www.unidata.ucar.edu Ticket Details =================== Ticket ID: FAC-106953 Department: Support netCDF Priority: Critical Status: Closed
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