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[netCDF #HSS-201489]: NetCDF (C) 4.4.0 failures in "make check"

Hi Carl,

The compatibility fix was released in 4.4.1; this error you describe below 
seems to be new, insofar as I haven't seen it before.  Can you provide the 
latest config.log?  I'll dig into this to see if I can figure out what's going 
on.  I don't have access to the PGI compiler, so I will be using gcc; is there 
a way to easily test with gcc on your end to see if perhaps this is related to 
the PGI compiler?  It's a shot in the dark, but it's the first thing that 
occurs to me when planning to recreate this.

Thanks!

-Ward

> *On 03/17/2016 05:37 PM, Carl Ponder wrote:*
> >
> >     I'm using the PGI 16.3 compiler to build NetCDF-C version 4.4.0.
> >     When I run the "make -i -k check" I see these issues
> >
> >         FAIL: nc_test
> >         FAIL: tst_atts3
> >
> *On 04/25/2016 02:14 PM, Unidata netCDF Support wrote:*
> >
> >     We do not currently support HDF5 1.10.0; the test failures you are 
> > seeing are the result (largely) of deprecated HDF5 functions being removed, 
> > I've been told.  This will be corrected.  However, the larger issue is 
> > this:  netCDF files created with netCDF 4.4.0 (or earlier) and HDF5 1.10.0 
> > will*not*  be readable by systems using netCDF 4.4.0 and HDF5 1.8.16 or 
> > earlier.  The underlying file is simply not backwards compatible.  We have 
> > released the first release candidate for netCDF 4.4.1, which corrects this 
> > (although the test failures remain).  These failures will be corrected in 
> > the next release candidate.
> >
> Ward -- I'm working with NetCDF-C 4.4.1 with HDF5 1.10.0-patch1 and the
> PGI 16,3 compiler.
> I'm still getting these failures, 3 of them I also had with 4.4.0:
> 
> 4.4.1/PGI-16.3_HDF5-1.10.0-patch1_OpenMPI-1.10.3_CUDA-7.5/slurm-18604.out:FAIL:
> tst_h_dimscales
> 4.4.1/PGI-16.3_HDF5-1.10.0-patch1_OpenMPI-1.10.3_CUDA-7.5/slurm-18604.out:FAIL:
> nc_test
> 4.4.1/PGI-16.3_HDF5-1.10.0-patch1_OpenMPI-1.10.3_CUDA-7.5/slurm-18604.out:FAIL:
> tst_atts3
> 4.4.1/PGI-16.3_HDF5-1.10.0-patch1_OpenMPI-1.10.3_CUDA-7.5/slurm-18604.out:FAIL:
> run_par_test.sh
> 
> Are the HDF5-compatibility fixes waiting until 4.4.2? Also here's a
> sample error-log, in case it's a new problem:
> 
> 1 ==========================================
> 2    netCDF 4.4.1: h5_test/test-suite.log
> 3 ==========================================
> 4
> 5 # TOTAL: 27
> 6 # PASS:  26
> 7 # SKIP:  0
> 8 # XFAIL: 0
> 9 # FAIL:  1
> 10 # XPASS: 0
> 11 # ERROR: 0
> 12
> 13 .. contents:: :depth: 2
> 14
> 15 FAIL: tst_h_dimscales
> 16 =====================
> 17
> 18 HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
> 19   #000: H5Gdeprec.c line 1092 in H5Gget_objtype_by_idx(): can't
> get object type
> 20     major: Symbol table
> 21     minor: Inappropriate type
> 22   #001: H5Gdeprec.c line 1144 in H5G_obj_get_type_by_idx(): can't
> locate type
> 23     major: Symbol table
> 24     minor: Object not found
> 25   #002: H5Gstab.c line 1219 in H5G__stab_get_type_by_idx(): index
> out of bound
> 26     major: Invalid arguments to routine
> 27     minor: Inappropriate type
> 28
> 29 *** Checking HDF5 dimension scales.
> 30 *** Creating simple dimension scales file...ok.
> 31 *** Checking that simple dimscale file can be read...ok.
> 32 *** Creating simple dimension scales file with lots of datasets...ok.
> 33 *** Creating a file with an unlimited dimension scale...ok.
> 34 *** Checking that unlimited dimscale file can be read...ok.
> 35 *** Creating some 3D datasets using shared dimscales...ok.
> 36 *** Checking 3D datasets created with shared dimscales...ok.
> 37 *** Creating 3D datasets using shared dimscales in groups...ok.
> 38 *** Checking 3D datasets in groups created with shared
> dimscales...Sorry! Unexpected result, tst_h_dimscales.c, line: 57
> 39 Sorry! Unexpected result, tst_h_dimscales.c, line: 67
> 40 Sorry! Unexpected result, tst_h_dimscales.c, line: 775
> 41 FAIL tst_h_dimscales (exit status: 2)
> 42
> 
> 
> 
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Ticket Details
===================
Ticket ID: HSS-201489
Department: Support netCDF
Priority: Normal
Status: Closed
===================
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