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[netCDF #LRX-899920]: Netcdf 4.3.3.1 with MPICH compilation error

Evelina,

Allow me to jump in with a question: were you using "make -j check" to run
make in parallel, to speed up the testing? If so, that may be the problem, 
because
some of the tests depend on previous tests in ways not represented in the make
rules, which means "make -j check" often fails when "make check" succeeds.

--Russ

> Sorry for that. Here is the config.log file:
> http://pastebin.com/YE21L07h ;
> 
> Thank you again!
> 
> 
> 
> On Thursday, May 21, 2015 2:57 AM, Unidata netCDF Support <address@hidden> 
> wrote:
> 
> 
> Hello Evelina,
> 
> Thank you very much for providing the information; I will look it over.
> When you run 'configure', a file is created, 'config.log', that contains
> verbose debugging information.  Can you provide this as well? It is
> different than the output sent to the command line by 'configure'.
> 
> Thanks!
> 
> -Ward
> 
> address@hidden> wrote:
> 
> > New Client Reply: Netcdf 4.3.3.1 with MPICH compilation error
> >
> > hi,
> > Thank you for the quick response!Here is the configure log:
> > http://pastebin.com/gRTP1GPD
> > Tests that fail and pass:http://pastebin.com/BkR7YFea
> > ncdump/test-suite.loghttp://pastebin.com/z87yeMTy
> >  ls ./src/netcdf-4.3.3.1/ncgen/c0.nc -la
> > -rw-r--r-- 1 root root 4828 May 21 02:18 ./src/netcdf-4.3.3.1/ncgen/c0.nc
> > ls -la ./src/netcdf-4.3.3.1/ncdump/c0.nc
> > -rw-r--r-- 1 root root 25263946 May 21 02:19 ./src/netcdf-4.3.3.1/ncdump/
> > c0.nc
> > ls -la ./src/netcdf-4.3.3.1/ncgen3/c0.nc
> > -rw-r--r-- 1 root root 4828 May 21 02:18 ./src/netcdf-4.3.3.1/ncgen3/c0.nc
> >
> > Best,Evelina
> >
> >
> >
> >
> > address@hidden> wrote:
> >
> >
> >  Hello Evelina,
> >
> > The thing that leaps out at me from the pastebin link is the following:
> >
> >    H5F.c line 604 in H5Fopen(): unable to open file
> >
> > This suggests to me that there is an error writing the file, somehow.  Can
> > you do an 'ls -al c0.nc' so that we can see the permissions and size of
> > the file?
> >
> > You do not need the '--enable-parallel' flag when running configure;
> > netcdf will query libhdf5, after detecting it, to see if libhdf5 supports
> > parallel operations.
> >
> > Finally, can you provide the 'config.log' file generated when you run
> > configure for netcdf?  This may provide some additional insight into the
> > issue.
> >
> > Thanks,
> >
> > -Ward
> >
> > > Hi,
> > >
> > > When I try to run the netcdf tests for version 4.3.3.1 I get the
> > following errors:
> > > http://pastebin.com/hXaw3hnc
> > >
> > > Environment variables for netcdf:  export
> > CC=/opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc
> > >  export CFLAGS="-I/opt/lib/mpi/mpich-3.1.4-gcc/include
> > -I/opt/lib/hdf5/hdf5-1.8.14-mpich/include"
> > >  export LDFLAGS="-L/opt/lib/mpi/mpich-3.1.4-gcc/lib
> > -L/opt/lib/hdf5/hdf5-1.8.14-mpich/lib"
> > >
> > > Configure flags:
> > >  ./configure --prefix=$INSTALL_DIR --disable-shared --enable-parallel
> > --enable-parallel-tests
> > >
> > > Environment variables for hdf5:  export
> > CC=/opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc
> > >  export LDFLAGS=-L/opt/lib/mpi/mpich-3.1.4-gcc/lib
> > >  export CFLAGS=-I/opt/lib/mpi/mpich-3.1.4-gcc/include
> > > Configure flags for hdf5
> > >  ./configure --prefix=$INSTALL_DIR --enable-parallel --disable-shared
> > >
> > > What can the problem be?
> > > Evelina
> > >
> > >
> >
> > Ticket Details
> > ===================
> > Ticket ID: LRX-899920
> > Department: Support netCDF
> > Priority: Normal
> > Status: Closed
> >
> >
> >
> >
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: LRX-899920
> > Department: Support netCDF
> > Priority: Normal
> > Status: Open
> > Link:
> > https://www.unidata.ucar.edu/esupport/staff/index.php?_m=tickets&_a=viewticket&ticketid=25658
> >
> >
> 
> 
> 
> Ticket Details
> ===================
> Ticket ID: LRX-899920
> Department: Support netCDF
> Priority: Normal
> Status: Open
> 
> 
> 
> 
> 

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: LRX-899920
Department: Support netCDF
Priority: Normal
Status: Closed