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[netCDF #MRB-844393]: make check failed

Hello Juanjo,

After a bit of investigation, we've come to the conclusion that the issue
is likely with the test itself, not with an error with the pnetcdf
functionality.  This test runs fine as a single process, and only began
failing recently when we started invoking it via 'mpiexec', with more than
2 processes.  I've spent a lot of time trying to track down where an error
would have been introduced, and I cannot find a place in our archives where
the test passed with multiple processes.

I will continue to investigate this and work on fixing the test so that it
works properly.  In the meantime, as long as your pnetcdf library passed
'make testing', I think you should be ok and can ignore this error.

Thank you very much for bringing this to our attention!

Have a good week,

-Ward


address@hidden> wrote:

> New Client Reply: make check failed
>
> Hi Ward
>
> There are 8 processors in my server. It is a homemade cluster with Rocks
> 6.1.
>
> Juanjo
>
> -----Mensaje original-----
> From: Unidata netCDF Support
> Sent: Friday, June 20, 2014 12:13 AM
> To: address@hidden
> Subject: [netCDF #MRB-844393]: make check failed
>
> Hi Juanjo,
>
> Out of curiosity (and I'm not sure it matters), but how many processors are
> on the machine you are testing with?
>
> -Ward
>
>
> address@hidden> wrote:
>
> > New Client Reply: make check failed
> >
> > Hi Ward
> >
> > Thanks for your message. I am using pnetcdf v. 1.4.1. Please, do not
> > hesitate to contact me if you need any further data.
> >
> > Cheers
> >
> > Juanjo
> >
> > -----Mensaje original-----
> > From: Unidata netCDF Support
> > Sent: Thursday, June 19, 2014 6:32 PM
> > To: address@hidden
> > Cc: address@hidden
> > Subject: [netCDF #MRB-844393]: make check failed
> >
> > Hello,
> >
> > Thank you for reporting the issue.  I do not test netCDF regularly with
> > pnetcdf, so I was unaware that there may be an issue.  Please allow me
> > some
> > time to set up a test environment and I will follow up with you about
> what
> > I
> > observer and, if necessary, how we might address this issue.
> > May I ask what version of pnetcdf you are using?
> >
> > -Ward
> >
> > > Hi all
> > >
> > > I have successfully installed parallel NetCDF-4.3.2 as:
> > >
> > > export
> > > CFLAGS="-fPIC -I/usr/local/hdf5-1.8.12/include -I/usr/local/include"
> > > export LDFLAGS="-L/usr/local/hdf5-1.8.12/lib -L/usr/local/lib"
> > > export LIBS="-lpnetcdf -lhdf5_hl -lhdf5 -lz -lm -lcurl"
> > >
> > > CC=mpicc
> > > ./configure --prefix="/usr/local/netcdf-4.3.2" --disable-shared
> > --enable-pnetcdf
> > >
> > > I have previously installed parallel-netcdf following the standard
> > > procedure. Building and compiling were apparently fine. After
> > installation
> > > I followed the recommendation to run "make check". Checking stopped
> with
> > > this message:
> > >
> > > **** LOTS OF SUCCESSFUL STUFF ****
> > >
> > > make[2]: Leaving directory `/home/bloch/Desktop/netcdf-4.3.2/nc_test'
> > > make  check-TESTS
> > > make[2]: Entering directory `/home/bloch/Desktop/netcdf-4.3.2/nc_test'
> > > make[3]: Entering directory `/home/bloch/Desktop/netcdf-4.3.2/nc_test'
> > > PASS: t_nc
> > > PASS: tst_small
> > > PASS: nc_test
> > > PASS: tst_misc
> > > PASS: tst_norm
> > > PASS: tst_names
> > > PASS: tst_nofill
> > > PASS: tst_nofill2
> > > PASS: tst_nofill3
> > > PASS: tst_atts3
> > > PASS: tst_atts
> > > PASS: tst_parallel2
> > > PASS: tst_pnetcdf
> > > PASS: tst_formatx_pnetcdf
> > > PASS: run_diskless.sh
> > > FAIL: run_pnetcdf_test.sh
> > > make[4]: Entering directory `/home/bloch/Desktop/netcdf-4.3.2/nc_test'
> > > make[4]: Nothing to be done for `all'.
> > > make[4]: Leaving directory `/home/bloch/Desktop/netcdf-4.3.2/nc_test'
> > >
> >
> ============================================================================
> > > Testsuite summary for netCDF 4.3.2
> > >
> >
> ============================================================================
> > > # TOTAL: 16
> > > # PASS:  15
> > > # SKIP:  0
> > > # XFAIL: 0
> > > # FAIL:  1
> > > # XPASS: 0
> > > # ERROR: 0
> > >
> >
> ============================================================================
> > > See nc_test/test-suite.log
> > > Please report to address@hidden
> > >
> >
> ============================================================================
> > > make[3]: Leaving directory `/home/bloch/Desktop/netcdf-4.3.2/nc_test'
> > > make[2]: Leaving directory `/home/bloch/Desktop/netcdf-4.3.2/nc_test'
> > > make[1]: Leaving directory `/home/bloch/Desktop/netcdf-4.3.2/nc_test'
> > > make[3]: *** [test-suite.log] Error 1
> > > make[2]: *** [check-TESTS] Error 2
> > > make[1]: *** [check-am] Error 2
> > > make: *** [check-recursive] Error 1
> > >
> > >
> > > What does this error message mean? Is it safe to ignore it? If it
> isn't,
> > > do you have any hint to solve the problem?
> > >
> > > Thanks a lot in advance
> > >
> > > Cheers
> > >
> > > Juanjo
> > >
> > > Juan J. Meléndez Martinez
> > > Associate Professor
> > > Department of Physics, University of Extremadura
> > > Badajoz (Spain)
> > >
> > >
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: MRB-844393
> > Department: Support netCDF
> > Priority: Normal
> > Status: Closed
> >
> >
> > ---
> > Este mensaje no contiene virus ni malware porque la protección de avast!
> > Antivirus está activa.
> > http://www.avast.com
> >
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: MRB-844393
> > Department: Support netCDF
> > Priority: Normal
> > Status: Open
> > Link:
> >
> https://www.unidata.ucar.edu/esupport/staff/index.php?_m=tickets&_a=viewticket&ticketid=24086
> >
> >
>
>
>
> Ticket Details
> ===================
> Ticket ID: MRB-844393
> Department: Support netCDF
> Priority: Normal
> Status: Open
>
>
> ---
> Este mensaje no contiene virus ni malware porque la protección de avast!
> Antivirus está activa.
> http://www.avast.com
>
>
>
> Ticket Details
> ===================
> Ticket ID: MRB-844393
> Department: Support netCDF
> Priority: Normal
> Status: Open
> Link:
> https://www.unidata.ucar.edu/esupport/staff/index.php?_m=tickets&_a=viewticket&ticketid=24086
>
>



Ticket Details
===================
Ticket ID: MRB-844393
Department: Support netCDF
Priority: Normal
Status: Closed