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[netCDF #PDX-714093]: netcdf

Greetings Carl,

The way you are setting up your environmental variables is not quite achieving 
the goal that you want. The output from configure shows that FC is set to '' 
(the configure scripts picks up ifort as your fortran compiler, which appears 
to be located at /opt/intel/fc/9.0/bin/ifort - this auto-detection is built in 
for cases where FC is not defined).  I tried to repeat what you listed as 
having in your bash_profile, and I too come up with a blank FC environmental 
variable. Essentially you have set the shell variable FC to $f95, which is not 
defined at the moment you set the variable, and thus FC is set to ''. Once you 
export the shell variable, it becomes an environmental variable (which was 
already set to '' when you declared the shell variable). I would suggest two 
things:

1) Change your bash_profile to export the variables individually and in order:

export 
PATH=$PATH:$HOME/bin:$NCARG_ROOT:$GCC:$FC:/opt/jrel.6.0_21/bin:/usr/local/lib:/usr/lib:/usr/local/lf9562/bin:/opt/intel/fc/9.0/bin:
export f95=/usr/local/lf9560/bin
export FC=$f95
export NCARG_ROOT=/usr/local
export LD_LIBRARY_PATH=/usr/lib

(Note: most bash shells on Linux distros can do the export and declaration on 
the same line - however, some will barf. If this does not work, try setting the 
variable first, then exporting it on the line immediately following the 
declaration.)

2) Is the executable for if95 called bin? If not, make sure you use the 
complete path to the compiler. For example, it could be something like: 

f95=/usr/local/lf9560/bin/if95


Let me know if rebuilding in the new environment helps.

Cheers!

Sean


> Attached is the output from ./configure
> 
> Carl.
> 
> -----Original Message-----
> From: Unidata netCDF Support [mailto:address@hidden]
> Sent: Tuesday, July 05, 2011 1:20 PM
> To: address@hidden
> Cc: address@hidden
> Subject: [netCDF #PDX-714093]: netcdf
> 
> Greetings Carl,
> 
> Would you mind sending me a log of the output from configure?
> 
> Thanks!
> 
> Sean
> 
> > Sean,
> >
> > Here is the information requested... Linux leviathan.ncd-tcn.noaa.gov 
> > 2.6.18-238.12.1.el5PAE #1 SMP Sat May 7 20:37:06 EDT 2011 i686 athlon i386 
> > GNU/Linux
> >
> >
> > The compiler I would like to use is lf95
> >
> > PATH=$PATH:$HOME/bin:$NCARG_ROOT:$GCC:$FC:/opt/jrel.6.0_21/bin:/usr/local/lib:/usr/lib:/usr/local/lf9562/bin:/opt/intel/fc/9.0/bin:
> > #NETCDF_F90=/disks/NASWORK/NETCDF_Fortran90
> > #GCC=/usr/bin/gcc
> > FC=$f95
> > f95=/usr/local/lf9560/bin
> > #F90=/opt/intel/Compiler/11.1/072/bin/ia32
> > #f90=/opt/intel/Compiler/11.1/072/bin/ia32
> > NCARG_ROOT=/usr/local
> > LD_LIBRARY_PATH=/usr/lib
> > #NCARG_ROOT=/disks/NASUSER/NCL_Binaries
> >
> > export PATH  NCARG_ROOT FC F90 GCC LD_LIBRARY_PATH
> > unset USERNAME
> >
> > I reconfigured netcdf-4.1.1 into a different directory and attempted to run 
> > a script and received the following error:
> >
> > -bash-3.2# ./fvcom.bathy.n.sh.lev
> > + ulimit -s unlimited
> > + lf95 ../interp_bathy_topo.f90 -o interp_fill 
> > -L/usr/lib/gcc/i386-redhat-linux/4.1.1 -lgcc -L/usr/X11R6/lib/ -lX11 
> > -I/usr/local/net_cdf/include -L/usr/local/net_cdf/lib -lnetcdf
> > 1431-S: "../interp_bathy_topo.f90", line 729: Filename specified in INCLUDE 
> > line not available.
> > 2005-W: "../interp_bathy_topo.f90", line 741: 'NF_NOERR' is used but never 
> > set.
> > 1431-S: "../interp_bathy_topo.f90", line 850: Filename specified in INCLUDE 
> > line not available.
> > 2005-W: "../interp_bathy_topo.f90", line 863: 'NF_NOERR' is used but never 
> > set.
> > 1431-S: "../interp_bathy_topo.f90", line 1044: Filename specified in 
> > INCLUDE line not available.
> > 2005-W: "../interp_bathy_topo.f90", line 1045: 'NF_NOERR' is used but never 
> > set.
> > Encountered 3 errors, 3 warnings in file ../interp_bathy_topo.f90.
> >
> >
> > The include directory does not have netcdf.inc
> >
> >
> > /usr/local/net_cdf/include
> > -bash-3.2# ll
> > total 68
> > -rw-r--r-- 1 root root 10123 Jul  5 11:44 ncvalues.h
> > -rw-r--r-- 1 root root 18918 Jul  5 11:44 netcdfcpp.h
> > -rw-r--r-- 1 root root 30285 Jul  5 11:43 netcdf.h
> > -rw-r--r-- 1 root root    23 Jul  5 11:44 netcdf.hh
> >
> >
> >
> >
> >
> >
> >
> > -----Original Message-----
> > From: Unidata netCDF Support [mailto:address@hidden]
> > Sent: Friday, July 01, 2011 1:01 PM
> > To: address@hidden
> > Cc: address@hidden
> > Subject: [netCDF #PDX-714093]: netcdf
> >
> > Greetings!
> >
> > The configure script will try to use whatever compiler you have set in the 
> > environmental variable FC. It looks like you have FC pointed to F95. On my 
> > system, I have f95, but not F95 (case sensitive). Try `which F95` at the 
> > command line and see what comes out. If it can't be found in your path, 
> > then that is likely why configure is failing. Also, I see you have a few 
> > compilers defined in your profile (gcc, intel, f95(?)) - which are you 
> > wishing to use as your fortran compiler?
> >
> > If you wouldn't mind, please let me know which OS you are using (the output 
> > of `uname -a` would be great), and a complete log of the output from your 
> > configure script.
> >
> > Thanks!
> >
> > Sean Arms
> >
> > > When running the .configure command, I received the following error:
> > > configure: error: Fortran could not compile .f90 files
> > >
> > >
> > >
> > >
> > >
> > > -bash-3.2# make check
> > >
> > > make: *** No rule to make target `check'.  Stop.
> > >
> > >
> > >
> > >
> > >
> > > Bash_profile looks as such:
> > >
> > >
> > >
> > > GCC=/usr/bin/gcc
> > >
> > > FC=F95
> > >
> > > F95=/opt/lf9560
> > >
> > > F90=/opt/intel/Compiler/11.1/072/bin/ia32
> > >
> > > #f90=/opt/intel/Compiler/11.1/072/bin/ia32
> > >
> > > NCARG_ROOT=/usr/local
> > >
> > > LD_LIBRARY_PATH=/usr/lib
> > >
> > > #NCARG_ROOT=/disks/NASUSER/NCL_Binaries
> > >
> > >
> > >
> > > export PATH  NCARG_ROOT FC F90 GCC LD_LIBRARY_PATH
> > >
> > > unset USERNAME
> > >
> > >
> > >
> >
> >
> > Ticket Details
> > ===================
> > Ticket ID: PDX-714093
> > Department: Support netCDF
> > Priority: Normal
> > Status: Open
> >
> >
> >
> 
> 
> Ticket Details
> ===================
> Ticket ID: PDX-714093
> Department: Support netCDF
> Priority: Normal
> Status: Open
> 
> 
> 


Ticket Details
===================
Ticket ID: PDX-714093
Department: Support netCDF
Priority: Normal
Status: Open