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[netCDF #SDJ-131296]: ncdump: H5Eint.c:709: H5E_printf_stack: Assertion `cls_id > 0' failed.

Hi Steve,

> Here's a work around.  The templog.install (appended on my
> previous email) shows that the ncdump link step is:
> 
> libtool: link: cc -g -g -o ncdump ncdump.o vardata.o dumplib.o indent.o 
> nctime.o  -L/d1/steves/ftp/hdf5/tdi/lib -L/d1/steves/ftp/zlib/tdi/lib 
> ../libsrc4/.libs/libnetcdf.a /usr/lib/libhdf5_hl.so /usr/lib/libhdf5.so 
> -lpthread /d1/steves/ftp/hdf5/tdi/lib/libhdf5_hl.so 
> /d1/steves/ftp/hdf5/tdi/lib/libhdf5.so -lm -lz -Wl,-rpath 
> -Wl,/d1/steves/ftp/hdf5/tdi/lib -Wl,-rpath -Wl,/d1/steves/ftp/hdf5/tdi/lib
> 
> It explicitly includes /usr/lib/libhdf5.so.
> 
> Relinking by hand without /usr/lib works, and now ncdump works.

Thanks for reporting this workaround.

The problem had been encountered earlier and we plan to include a fix in
netCDF 4.2, as described in these two earlier suppoort responses:

http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg08894.html
http://www.unidata.ucar.edu/support/help/MailArchives/netcdf/msg08896.html

--Russ

> Steve
> 
> 
> 
> 
> 
> 
> 
> 
> On Fri, Aug 27, 2010 at 10:21:23AM -0600, Unidata netCDF Support wrote:
> >
> > Steve Sullivan,
> >
> > Your Ticket has been received, and a Unidata staff member will review it 
> > and reply accordingly. Listed below are details of this new Ticket. Please 
> > make sure the Ticket ID remains in the Subject: line on all correspondence 
> > related to this Ticket.
> >
> >     Ticket ID: SDJ-131296
> >     Subject: ncdump: H5Eint.c:709: H5E_printf_stack: Assertion `cls_id > 0' 
> > failed.
> >     Department: Support netCDF
> >     Priority: Normal
> >     Status: Open
> >
> >
> >
> > The NetCDF libraries are developed at the Unidata Program Center/UCAR,
> > in Boulder, Colorado; we are funded primarily by the U.S. National
> > Science Foundation.
> >
> > All support requests are handled by the development team; no
> > dedicated support staff are funded at this time. For this reason
> > we cannot guarantee response times, nor can we resolve every support
> > issue, although we do our best to respond within 72 hours.
> >
> > It is in the nature of support requests that the same question is
> > asked many times. We urge you to search the support archives for
> > material relating to your support inquiry:
> >
> > http://www.unidata.ucar.edu/search.jsp?support&netcdf
> >
> > If you are having trouble building netCDF, please take a look at the
> > "Build Troubleshooter" section of the netCDF home page:
> >
> > http://www.unidata.ucar.edu/software/netcdf/
> >
> > Windows users should see the FAQ list:
> >
> > http://www.unidata.ucar.edu/software/netcdf/docs/faq.html#windows_netcdf4
> >
> > Complete documentation (including a tutorial, and sample programs in
> > C, Fortran, Java, and other programming languages) can be found on the
> > netCDF Documentation page:
> >
> > http://www.unidata.ucar.edu/software/netcdf/docs/
> >
> > If you resolve your issue through one of these methods, please send a
> > reply to this email letting us know that you no longer require
> > assistance. This will help us spend more time on netCDF development.
> >
> > Best regards,
> >
> > Unidata User Support
> 
> --
> Steve Sullivan   address@hidden     303-497-2823
> 
> FL/2, Research Applications Laboratory
> National Center for Atmospheric Research
> PO Box 3000
> Boulder CO  80307
> USA
> 
> 

Russ Rew                                         UCAR Unidata Program
address@hidden                      http://www.unidata.ucar.edu



Ticket Details
===================
Ticket ID: SDJ-131296
Department: Support netCDF
Priority: Critical
Status: Closed