Unidata - To provide the data services, tools, and cyberinfrastructure leadership that advance Earth system science, enhance educational opportunities, and broaden participation. Unidata
         
  advanced  
 

NetCDF Fortran 90 Interface Guide


Next: , Previous: (dir), Up: (dir)

The NetCDF Fortran 90 Interface Guide

This document describes the Fortran 90 interface to the netCDF library. It applies to netCDF version 4.0. This document was last updated in 27 June 2008.

For a complete description of the netCDF format and utilities see The NetCDF Users Guide (The NetCDF Users Guide).

--- The Detailed Node Listing ---

Use of the NetCDF Library

Datasets

Groups

Dimensions

User Defined Data Types

Example

Compound Types Introduction

Variable Length Array Introduction

Opaque Type Introduction

Example

Enum Type Introduction

Variables

Attributes


Next: , Previous: Top, Up: Top

1 Use of the NetCDF Library

You can use the netCDF library without knowing about all of the netCDF interface. If you are creating a netCDF dataset, only a handful of routines are required to define the necessary dimensions, variables, and attributes, and to write the data to the netCDF dataset. (Even less are needed if you use the ncgen utility to create the dataset before running a program using netCDF library calls to write data. See ncgen (NetCDF Users Guide).) Similarly, if you are writing software to access data stored in a particular netCDF object, only a small subset of the netCDF library is required to open the netCDF dataset and access the data. Authors of generic applications that access arbitrary netCDF datasets need to be familiar with more of the netCDF library.

In this chapter we provide templates of common sequences of netCDF calls needed for common uses. For clarity we present only the names of routines; omit declarations and error checking; omit the type-specific suffixes of routine names for variables and attributes; indent statements that are typically invoked multiple times; and use ... to represent arbitrary sequences of other statements. Full parameter lists are described in later chapters.


Next: , Previous: Use of the NetCDF Library, Up: Use of the NetCDF Library

1.1 Creating a NetCDF Dataset

Here is a typical sequence of netCDF calls used to create a new netCDF dataset:

          NF90_CREATE           ! create netCDF dataset: enter define mode
               ...
             NF90_DEF_DIM       ! define dimensions: from name and length
               ...
             NF90_DEF_VAR       ! define variables: from name, type, dims
               ...
             NF90_PUT_ATT       ! assign attribute values
               ...
          NF90_ENDDEF           ! end definitions: leave define mode
               ...
             NF90_PUT_VAR       ! provide values for variable
               ...
          NF90_CLOSE            ! close: save new netCDF dataset

Only one call is needed to create a netCDF dataset, at which point you will be in the first of two netCDF modes. When accessing an open netCDF dataset, it is either in define mode or data mode. In define mode, you can create dimensions, variables, and new attributes, but you cannot read or write variable data. In data mode, you can access data and change existing attributes, but you are not permitted to create new dimensions, variables, or attributes.

One call to NF90_DEF_DIM is needed for each dimension created. Similarly, one call to NF90_DEF_VAR is needed for each variable creation, and one call to a member of the NF90_PUT_ATT family is needed for each attribute defined and assigned a value. To leave define mode and enter data mode, call NF90_ENDDEF.

Once in data mode, you can add new data to variables, change old values, and change values of existing attributes (so long as the attribute changes do not require more storage space). Data of all types is written to a netCDF variable using the NF90_PUT_VAR subroutine. Single values, arrays, or array sections may be supplied to NF90_PUT_VAR; optional arguments allow the writing of subsampled or mapped portions of the variable. (Subsampled and mapped access are general forms of data access that are explained later.)

Finally, you should explicitly close all netCDF datasets that have been opened for writing by calling NF90_CLOSE. By default, access to the file system is buffered by the netCDF library. If a program terminates abnormally with netCDF datasets open for writing, your most recent modifications may be lost. This default buffering of data is disabled by setting the NF90_SHARE flag when opening the dataset. But even if this flag is set, changes to attribute values or changes made in define mode are not written out until NF90_SYNC or NF90_CLOSE is called.


Next: , Previous: Creating a NetCDF Dataset, Up: Use of the NetCDF Library

1.2 Reading a NetCDF Dataset with Known Names

Here we consider the case where you know the names of not only the netCDF datasets, but also the names of their dimensions, variables, and attributes. (Otherwise you would have to do "inquire" calls.) The order of typical C calls to read data from those variables in a netCDF dataset is:

          NF90_OPEN               ! open existing netCDF dataset
               ...
             NF90_INQ_DIMID       ! get dimension IDs
               ...
             NF90_INQ_VARID       ! get variable IDs
               ...
             NF90_GET_ATT         ! get attribute values
               ...
             NF90_GET_VAR         ! get values of variables
               ...
          NF90_CLOSE              ! close netCDF dataset

First, a single call opens the netCDF dataset, given the dataset name, and returns a netCDF ID that is used to refer to the open netCDF dataset in all subsequent calls.

Next, a call to NF90_INQ_DIMID for each dimension of interest gets the dimension ID from the dimension name. Similarly, each required variable ID is determined from its name by a call to NF90_INQ_VARID. Once variable IDs are known, variable attribute values can be retrieved using the netCDF ID, the variable ID, and the desired attribute name as input to NF90_GET_ATT for each desired attribute. Variable data values can be directly accessed from the netCDF dataset with calls to NF90_GET_VAR.

Finally, the netCDF dataset is closed with NF90_CLOSE. There is no need to close a dataset open only for reading.


Next: , Previous: Reading a NetCDF Dataset with Known Names, Up: Use of the NetCDF Library

1.3 Reading a netCDF Dataset with Unknown Names

It is possible to write programs (e.g., generic software) which do such things as processing every variable, without needing to know in advance the names of these variables. Similarly, the names of dimensions and attributes may be unknown.

Names and other information about netCDF objects may be obtained from netCDF datasets by calling inquire functions. These return information about a whole netCDF dataset, a dimension, a variable, or an attribute. The following template illustrates how they are used:

          NF90_OPEN                 ! open existing netCDF dataset
            ...
          NF90_INQUIRE              ! find out what is in it
               ...
             NF90_INQUIRE_DIMENSION ! get dimension names, lengths
               ...
             NF90_INQUIRE_VARIABLE  ! get variable names, types, shapes
                  ...
                NF90_INQ_ATTNAME    ! get attribute names
                  ...
                NF90_INQUIRE_ATTRIBUTE ! get other attribute information
                  ...
                NF90_GET_ATT        ! get attribute values
                  ...
             NF90_GET_VAR           ! get values of variables
               ...
          NF90_CLOSE                ! close netCDF dataset

As in the previous example, a single call opens the existing netCDF dataset, returning a netCDF ID. This netCDF ID is given to the NF90_INQUIRE routine, which returns the number of dimensions, the number of variables, the number of global attributes, and the ID of the unlimited dimension, if there is one.

All the inquire functions are inexpensive to use and require no I/O, since the information they provide is stored in memory when a netCDF dataset is first opened.

Dimension IDs use consecutive integers, beginning at 1. Also dimensions, once created, cannot be deleted. Therefore, knowing the number of dimension IDs in a netCDF dataset means knowing all the dimension IDs: they are the integers 1, 2, 3, ...up to the number of dimensions. For each dimension ID, a call to the inquire function NF90_INQUIRE_DIMENSION returns the dimension name and length.

Variable IDs are also assigned from consecutive integers 1, 2, 3, ... up to the number of variables. These can be used in NF90_INQUIRE_VARIABLE calls to find out the names, types, shapes, and the number of attributes assigned to each variable.

Once the number of attributes for a variable is known, successive calls to NF90_INQ_ATTNAME return the name for each attribute given the netCDF ID, variable ID, and attribute number. Armed with the attribute name, a call to NF90_INQUIRE_ATTRIBUTE returns its type and length. Given the type and length, you can allocate enough space to hold the attribute values. Then a call to NF90_GET_ATT returns the attribute values.

Once the IDs and shapes of netCDF variables are known, data values can be accessed by calling NF90_GET_VAR.


Next: , Previous: Reading a netCDF Dataset with Unknown Names, Up: Use of the NetCDF Library

1.4 Writing Data in an Existing NetCDF Dataset

With write access to an existing netCDF dataset, you can overwrite data values in existing variables or append more data to record variables along the unlimited (record) dimension. To append more data to non-record variables requires changing the shape of such variables, which means creating a new netCDF dataset, defining new variables with the desired shape, and copying data. The netCDF data model was not designed to make such "schema changes" efficient or easy, so it is best to specify the shapes of variables correctly when you create a netCDF dataset, and to anticipate which variables will later grow by using the unlimited dimension in their definition.

The following code template lists a typical sequence of calls to overwrite some existing values and add some new records to record variables in an existing netCDF dataset with known variable names:

          NF90_OPEN             ! open existing netCDF dataset
            ...
            NF90_INQ_VARID      ! get variable IDs
            ...
            NF90_PUT_VAR        ! provide new values for variables, if any
            ...
            NF90_PUT_ATT        ! provide new values for attributes, if any
              ...
          NF90_CLOSE            ! close netCDF dataset

A netCDF dataset is first opened by the NF90_OPEN call. This call puts the open dataset in data mode, which means existing data values can be accessed and changed, existing attributes can be changed, but no new dimensions, variables, or attributes can be added.

Next, calls to NF90_INQ_VARID get the variable ID from the name, for each variable you want to write. Then each call to NF90_PUT_VAR writes data into a specified variable, either a single value at a time, or a whole set of values at a time, depending on which variant of the interface is used. The calls used to overwrite values of non-record variables are the same as are used to overwrite values of record variables or append new data to record variables. The difference is that, with record variables, the record dimension is extended by writing values that don't yet exist in the dataset. This extends all record variables at once, writing "fill values" for record variables for which the data has not yet been written (but see Fill Values to specify different behavior).

Calls to NF90_PUT_ATT may be used to change the values of existing attributes, although data that changes after a file is created is typically stored in variables rather than attributes.

Finally, you should explicitly close any netCDF datasets into which data has been written by calling NF90_CLOSE before program termination. Otherwise, modifications to the dataset may be lost.


Next: , Previous: Writing Data in an Existing NetCDF Dataset, Up: Use of the NetCDF Library

1.5 Adding New Dimensions, Variables, Attributes

An existing netCDF dataset can be extensively altered. New dimensions, variables, and attributes can be added or existing ones renamed, and existing attributes can be deleted. Existing dimensions, variables, and attributes can be renamed. The following code template lists a typical sequence of calls to add new netCDF components to an existing dataset:

          NF90_OPEN             ! open existing netCDF dataset
            ...
          NF90_REDEF            ! put it into define mode
              ...
            NF90_DEF_DIM        ! define additional dimensions (if any)
              ...
            NF90_DEF_VAR        ! define additional variables (if any)
              ...
            NF90_PUT_ATT        ! define other attributes (if any)
              ...
          NF90_ENDDEF           ! check definitions, leave define mode
              ...
            NF90_PUT_VAR        ! provide new variable values
              ...
          NF90_CLOSE            ! close netCDF dataset

A netCDF dataset is first opened by the NF90_OPEN call. This call puts the open dataset in data mode, which means existing data values can be accessed and changed, existing attributes can be changed (so long as they do not grow), but nothing can be added. To add new netCDF dimensions, variables, or attributes you must enter define mode, by calling NF90_REDEF. In define mode, call NF90_DEF_DIM to define new dimensions, NF90_DEF_VAR to define new variables, and NF90_PUT_ATT to assign new attributes to variables or enlarge old attributes.

You can leave define mode and reenter data mode, checking all the new definitions for consistency and committing the changes to disk, by calling NF90_ENDDEF. If you do not wish to reenter data mode, just call NF90_CLOSE, which will have the effect of first calling NF90_ENDDEF.

Until the NF90_ENDDEF call, you may back out of all the redefinitions made in define mode and restore the previous state of the netCDF dataset by calling NF90_ABORT. You may also use the NF90_ABORT call to restore the netCDF dataset to a consistent state if the call to NF90_ENDDEF fails. If you have called NF90_CLOSE from definition mode and the implied call to NF90_ENDDEF fails, NF90_ABORT will automatically be called to close the netCDF dataset and leave it in its previous consistent state (before you entered define mode).

At most one process should have a netCDF dataset open for writing at one time. The library is designed to provide limited support for multiple concurrent readers with one writer, via disciplined use of the NF90_SYNC function and the NF90_SHARE flag. If a writer makes changes in define mode, such as the addition of new variables, dimensions, or attributes, some means external to the library is necessary to prevent readers from making concurrent accesses and to inform readers to call NF90_SYNC before the next access.


Next: , Previous: Adding New Dimensions, Up: Use of the NetCDF Library

1.6 Error Handling

The netCDF library provides the facilities needed to handle errors in a flexible way. Each netCDF function returns an integer status value. If the returned status value indicates an error, you may handle it in any way desired, from printing an associated error message and exiting to ignoring the error indication and proceeding (not recommended!). For simplicity, the examples in this guide check the error status and call a separate function to handle any errors.

The NF90_STRERROR function is available to convert a returned integer error status into an error message string.

Occasionally, low-level I/O errors may occur in a layer below the netCDF library. For example, if a write operation causes you to exceed disk quotas or to attempt to write to a device that is no longer available, you may get an error from a layer below the netCDF library, but the resulting write error will still be reflected in the returned status value.


Previous: Error Handling, Up: Use of the NetCDF Library

1.7 Compiling and Linking with the NetCDF Library

Details of how to compile and link a program that uses the netCDF C or Fortran interfaces differ, depending on the operating system, the available compilers, and where the netCDF library and include files are installed.

Every Fortran 90 procedure or module which references netCDF constants or procedures must have access to the module information created when the netCDF module was compiled. The suffix for this file is “MOD” (or sometimes “mod”).

Most F90 compilers allow the user to specify the location of .MOD files, usually with the -I flag. (Some compilers, like absoft, use -p instead).

     f90 -c -I/usr/local/include mymodule.f90

Starting with version 3.6.2, another method of building the netCDF fortran libraries becomes available. With the –enable-separate-fortran option to configure, the user can specify that the C library should not contain the fortran functions. In these cases an additional library, libnetcdff.a (not the extra “f”) will be built. This library contains the fortran functions.

For more information about configure options, See Specifying the Environment for Building (The NetCDF Installation and Porting Guide).

Building separate fortran libraries is required for shared library builds, but is not done, by default, for static library builds.

When linking fortran programs without a separate fortran library, programs must link to the netCDF library like this:

     f90 -o myprogram myprogram.o -L/usr/local/netcdf/lib -lnetcdf


Next: , Previous: Use of the NetCDF Library, Up: Top

2 Datasets


Next: , Previous: Datasets, Up: Datasets

2.1 Datasets Introduction

This chapter presents the interfaces of the netCDF functions that deal with a netCDF dataset or the whole netCDF library.

A netCDF dataset that has not yet been opened can only be referred to by its dataset name. Once a netCDF dataset is opened, it is referred to by a netCDF ID, which is a small nonnegative integer returned when you create or open the dataset. A netCDF ID is much like a file descriptor in C or a logical unit number in FORTRAN. In any single program, the netCDF IDs of distinct open netCDF datasets are distinct. A single netCDF dataset may be opened multiple times and will then have multiple distinct netCDF IDs; however at most one of the open instances of a single netCDF dataset should permit writing. When an open netCDF dataset is closed, the ID is no longer associated with a netCDF dataset.

Functions that deal with the netCDF library include:

The operations supported on a netCDF dataset as a single object are:


Next: , Previous: Datasets Introduction, Up: Datasets

2.2 NetCDF Library Interface Descriptions

Each interface description for a particular netCDF function in this and later chapters contains:

The examples follow a simple convention for error handling, always checking the error status returned from each netCDF function call and calling a handle_error function in case an error was detected. For an example of such a function, see Section 5.2 "Get error message corresponding to error status: nc_strerror".


Next: , Previous: NetCDF Library Interface Descriptions, Up: Datasets

2.3 NF90_STRERROR

The function NF90_STRERROR returns a static reference to an error message string corresponding to an integer netCDF error status or to a system error number, presumably returned by a previous call to some other netCDF function. The list of netCDF error status codes is available in the appropriate include file for each language binding.

Usage

      function nf90_strerror(ncerr)
        integer, intent( in) :: ncerr
        character(len = 80)  :: nf90_strerror
NCERR
An error status that might have been returned from a previous call to some netCDF function.

Errors

If you provide an invalid integer error status that does not correspond to any netCDF error message or or to any system error message (as understood by the system strerror function), NF90_STRERROR returns a string indicating that there is no such error status.

Example

Here is an example of a simple error handling function that uses NF90_STRERROR to print the error message corresponding to the netCDF error status returned from any netCDF function call and then exit:

      subroutine handle_err(status)
        integer, intent ( in) :: status
     
        if(status /= nf90_noerr) then
          print *, trim(nf90_strerror(status))
          stop "Stopped"
        end if
      end subroutine handle_err


Next: , Previous: NF90_STRERROR, Up: Datasets

2.4 Get netCDF library version: NF90_INQ_LIBVERS

The function NF90_INQ_LIBVERS returns a string identifying the version of the netCDF library, and when it was built.

Usage

      function nf90_inq_libvers()
        character(len = 80) :: nf90_inq_libvers

Errors

This function takes no arguments, and returns no error status.

Example

Here is an example using nc_inq_libvers to print the version of the netCDF library with which the program is linked:

      print *, trim(nf90_inq_libvers())


Next: , Previous: NF90_INQ_LIBVERS, Up: Datasets

2.5 NF90_CREATE

This function creates a new netCDF dataset, returning a netCDF ID that can subsequently be used to refer to the netCDF dataset in other netCDF function calls. The new netCDF dataset opened for write access and placed in define mode, ready for you to add dimensions, variables, and attributes.

A creation mode flag specifies whether to overwrite any existing dataset with the same name and whether access to the dataset is shared.

Usage

      function nf90_create(path, cmode, ncid)
        character (len = *), intent(in   ) :: path
        integer,             intent(in   ) :: cmode
        integer, optional,   intent(in   ) :: initialsize
        integer, optional,   intent(inout) :: chunksize
        integer,             intent(  out) :: ncid
        integer                            :: nf90_create
path
The file name of the new netCDF dataset.
cmode
The creation mode flag. The following flags are available: NF90_NOCLOBBER, NF90_SHARE, NF90_64BIT_OFFSET, NF90_HDF5, and NF90_CLASSIC_MODEL.

A zero value (defined for convenience as NF90_CLOBBER) specifies the default behavior: overwrite any existing dataset with the same file name and buffer and cache accesses for efficiency. The dataset will be in netCDF classic format. See NetCDF Classic Format Limitations (NetCDF Users' Guide).

Setting NF90_NOCLOBBER means you do not want to clobber (overwrite) an existing dataset; an error (NF90_EEXIST) is returned if the specified dataset already exists.

The NF90_SHARE flag is appropriate when one process may be writing the dataset and one or more other processes reading the dataset concurrently; it means that dataset accesses are not buffered and caching is limited. Since the buffering scheme is optimized for sequential access, programs that do not access data sequentially may see some performance improvement by setting the NF90_SHARE flag. (This only applies to netCDF-3 classic or 64-bit offset files.)

Setting NF90_64BIT_OFFSET causes netCDF to create a 64-bit offset format file, instead of a netCDF classic format file. The 64-bit offset format imposes far fewer restrictions on very large (i.e. over 2 GB) data files. See Large File Support (NetCDF Users' Guide).

Setting the NF90_HDF5 flag causes netCDF to create a netCDF-4/HDF5 format output file.

Oring the NF90_CLASSIC_MODEL flag with the NF90_HDF5 flag causes the resulting netCDF-4/HDF5 file to restrict itself to the classic model - none of the new netCDF-4 data model features, such as groups or user-defined types, are allowed in such a file.

ncid
Returned netCDF ID.

The following optional arguments allow additional performance tuning.

initialsize
The initial size of the file (in bytes) at creation time. A value of 0 causes the file size to be computed when nf90_enddef is called. This is ignored for NetCDF-4/HDF5 files.
chunksize
Controls a space versus time trade-off, memory allocated in the netcdf library versus number of system calls. Because of internal requirements, the value may not be set to exactly the value requested. The actual value chosen is returned.

The library chooses a system-dependent default value if NF90_SIZEHINT_DEFAULT is supplied as input. If the "preferred I/O block size" is available from the stat() system call as member st_blksize this value is used. Lacking that, twice the system pagesize is used. Lacking a call to discover the system pagesize, the default chunksize is set to 8192 bytes.

The chunksize is a property of a given open netcdf descriptor ncid, it is not a persistent property of the netcdf dataset.

This is ignored for NetCDF-4/HDF5 files.

Errors

NF90_CREATE returns the value NF90_NOERR if no errors occurred. Possible causes of errors include:

Example

In this example we create a netCDF dataset named foo.nc; we want the dataset to be created in the current directory only if a dataset with that name does not already exist:

      use netcdf
      implicit none
      integer :: ncid, status
      ...
      status = nf90_create(path = "foo.nc", cmode = nf90_noclobber, ncid = ncid)
      if (status /= nf90_noerr) call handle_err(status)


Next: , Previous: NF90_CREATE, Up: Datasets

2.6 NF90_OPEN

The function NF90_OPEN opens an existing netCDF dataset for access.

Usage

      function nf90_open(path, mode, ncid, chunksize)
        character (len = *), intent(in   ) :: path
        integer,             intent(in   ) :: mode
        integer,             intent(  out) :: ncid
        integer, optional,   intent(inout) :: chunksize
        integer                            :: nf90_open
path
File name for netCDF dataset to be opened.
omode
A zero value (or NF90_NOWRITE) specifies the default behavior: open the dataset with read-only access, buffering and caching accesses for efficiency

Otherwise, the creation mode is NF90_WRITE, NF90_SHARE, or NF90_WRITE|NF90_SHARE. Setting the NF90_WRITE flag opens the dataset with read-write access. ("Writing" means any kind of change to the dataset, including appending or changing data, adding or renaming dimensions, variables, and attributes, or deleting attributes.) The NF90_SHARE flag is appropriate when one process may be writing the dataset and one or more other processes reading the dataset concurrently; it means that dataset accesses are not buffered and caching is limited. Since the buffering scheme is optimized for sequential access, programs that do not access data sequentially may see some performance improvement by setting the NF90_SHARE flag.

ncid
Returned netCDF ID.

The following optional argument allows additional performance tuning.

chunksize
Controls a space versus time trade-off, memory allocated in the netcdf library versus number of system calls. Because of internal requirements, the value may not be set to exactly the value requested. The actual value chosen is returned.

The library chooses a system-dependent default value if NF90_SIZEHINT_DEFAULT is supplied as input. If the "preferred I/O block size" is available from the stat() system call as member st_blksize this value is used. Lacking that, twice the system pagesize is used. Lacking a call to discover the system pagesize, the default chunksize is set to 8192 bytes.

The chunksize is a property of a given open netcdf descriptor ncid, it is not a persistent property of the netcdf dataset.

Errors

NF90_OPEN returns the value NF90_NOERR if no errors occurred. Otherwise, the returned status indicates an error. Possible causes of errors include:

Example

Here is an example using NF90_OPEN to open an existing netCDF dataset named foo.nc for read-only, non-shared access:

      use netcdf
      implicit none
      integer :: ncid, status
      ...
      status = nf90_open(path = "foo.nc", cmode = nf90_nowrite, ncid = ncid)
      if (status /= nf90_noerr) call handle_err(status)


Next: , Previous: NF90_OPEN, Up: Datasets

2.7 NF90_REDEF

The function NF90_REDEF puts an open netCDF dataset into define mode, so dimensions, variables, and attributes can be added or renamed and attributes can be deleted.

Usage

      function nf90_redef(ncid)
        integer, intent( in) :: ncid
        integer              :: nf90_redef
ncid
netCDF ID, from a previous call to NF90_OPEN or NF90_CREATE.

Errors

NF90_REDEF returns the value NF90_NOERR if no errors occurred. Otherwise, the returned status indicates an error. Possible causes of errors include:

Example

Here is an example using NF90_REDEF to open an existing netCDF dataset named foo.nc and put it into define mode:

      use netcdf
      implicit none
      integer :: ncid, status
      ...
      status = nf90_open("foo.nc", nf90_write, ncid) ! Open dataset
      if (status /= nf90_noerr) call handle_err(status)
      ...
      status = nf90_redef(ncid)                       ! Put the file in define mode
      if (status /= nf90_noerr) call handle_err(status)


Next: , Previous: NF90_REDEF, Up: Datasets

2.8 NF90_ENDDEF

The function NF90_ENDDEF takes an open netCDF dataset out of define mode. The changes made to the netCDF dataset while it was in define mode are checked and committed to disk if no problems occurred. Non-record variables may be initialized to a "fill value" as well (see NF90_SET_FILL). The netCDF dataset is then placed in data mode, so variable data can be read or written.

This call may involve copying data under some circumstances. For a more extensive discussion See File Structure and Performance (NetCDF Users Guide).

Usage

      function nf90_enddef(ncid, h_minfree, v_align, v_minfree, r_align)
        integer,           intent( in) :: ncid
        integer, optional, intent( in) :: h_minfree, v_align, v_minfree, r_align
        integer                        :: nf90_enddef
ncid
NetCDF ID, from a previous call to NF90_OPEN or NF90_CREATE.

The following arguments allow additional performance tuning. Note: these arguments expose internals of the netcdf version 1 file format, and may not be available in future netcdf implementations.

The current netcdf file format has three sections: the "header" section, the data section for fixed size variables, and the data section for variables which have an unlimited dimension (record variables). The header begins at the beginning of the file. The index (offset) of the beginning of the other two sections is contained in the header. Typically, there is no space between the sections. This causes copying overhead to accrue if one wishes to change the size of the sections, as may happen when changing the names of things, text attribute values, adding attributes or adding variables. Also, for buffered i/o, there may be advantages to aligning sections in certain ways.

The minfree parameters allow one to control costs of future calls to nf90_redef or nf90_enddef by requesting that some space be available at the end of the section. The default value for both h_minfree and v_minfree is 0.

The align parameters allow one to set the alignment of the beginning of the corresponding sections. The beginning of the section is rounded up to an index which is a multiple of the align parameter. The flag value NF90_ALIGN_CHUNK tells the library to use the chunksize (see above) as the align parameter. The default value for both v_align and r_align is 4 bytes.

h_minfree
Size of the pad (in bytes) at the end of the "header" section.
v_minfree
Size of the pad (in bytes) at the end of the data section for fixed size variables.
v_align
The alignment of the beginning of the data section for fixed size variables.
r_align
The alignment of the beginning of the data section for variables which have an unlimited dimension (record variables).

Errors

NF90_ENDDEF returns the value NF90_NOERR if no errors occurred. Otherwise, the returned status indicates an error. Possible causes of errors include:

Example

Here is an example using NF90_ENDDEF to finish the definitions of a new netCDF dataset named foo.nc and put it into data mode:

      use netcdf
      implicit none
      integer :: ncid, status
      ...
      status = nf90_create("foo.nc", nf90_noclobber, ncid)
      if (status /= nf90_noerr) call handle_err(status)
      ...  !  create dimensions, variables, attributes
      status = nf90_enddef(ncid)
      if (status /= nf90_noerr) call handle_err(status)


Next: , Previous: NF90_ENDDEF, Up: Datasets

2.9 NF90_CLOSE

The function NF90_CLOSE closes an open netCDF dataset. If the dataset is in define mode, NF90_ENDDEF will be called before closing. (In this case, if NF90_ENDDEF returns an error, NF90_ABORT will automatically be called to restore the dataset to the consistent state before define mode was last entered.) After an open netCDF dataset is closed, its netCDF ID may be reassigned to the next netCDF dataset that is opened or created.

Usage

      function nf90_close(ncid)
        integer, intent( in) :: ncid
        integer              :: nf90_close
ncid
NetCDF ID, from a previous call to NF90_OPEN or NF90_CREATE.

Errors

NF90_CLOSE returns the value NF90_NOERR if no errors occurred. Otherwise, the returned status indicates an error. Possible causes of errors include:

Example

Here is an example using NF90_CLOSE to finish the definitions of a new netCDF dataset named foo.nc and release its netCDF ID:

      use netcdf
      implicit none
      integer :: ncid, status
      ...
      status = nf90_create("foo.nc", nf90_noclobber, ncid)
      if (status /= nf90_noerr) call handle_err(status)
      ...  !  create dimensions, variables, attributes
      status = nf90_close(ncid)
      if (status /= nf90_noerr) call handle_err(status)


Next: , Previous: NF90_CLOSE, Up: Datasets

2.10 NF90_INQUIRE Family

The NF90_INQUIRE subroutine returns information about an open netCDF dataset, given its netCDF ID. The subroutine can be called from either define mode or data mode, and returns values for any or all of the following: the number of dimensions, the number of variables, the number of global attributes, and the dimension ID of the dimension defined with unlimited length, if any. An additional function, NF90_INQ_FORMAT, returns the (rarely needed) format version.

No I/O is performed when NF90_INQUIRE is called, since the required information is available in memory for each open netCDF dataset.

Usage

      function nf90_inquire(ncid, nDimensions, nVariables, nAttributes, &
                            unlimitedDimId, formatNum)
        integer,           intent( in) :: ncid
        integer, optional, intent(out) :: nDimensions, nVariables, &
                                          nAttributes, unlimitedDimId, &
                                          formatNum
        integer                        :: nf90_inquire
ncid
NetCDF ID, from a previous call to NF90_OPEN or NF90_CREATE.
nDimensions
Returned number of dimensions defined for this netCDF dataset.
nVariables
Returned number of variables defined for this netCDF dataset.
nAttributes
Returned number of global attributes defined for this netCDF dataset.
unlimitedDimID
Returned ID of the unlimited dimension, if there is one for this netCDF dataset. If no unlimited length dimension has been defined, -1 is returned.
format
Returned integer indicating format version for this dataset, one of nf90_format_classic, nf90_format_64bit, nf90_format_netcdf4, or nf90_format_netcdf4_classic. These are rarely needed by users or applications, since thhe library recognizes the format of a file it is accessing and handles it accordingly.

Errors

Function NF90_INQUIRE returns the value NF90_NOERR if no errors occurred. Otherwise, the returned status indicates an error. Possible causes of errors include:

Example

Here is an example using NF90_INQUIRE to find out about a netCDF dataset named foo.nc:

      use netcdf
      implicit none
      integer :: ncid, status, nDims, nVars, nGlobalAtts, unlimDimID
      ...
      status = nf90_open("foo.nc", nf90_nowrite, ncid)
      if (status /= nf90_noerr) call handle_err(status)
      ...
      status = nf90_inquire(ncid, nDims, nVars, nGlobalAtts, unlimdimid)
      if (status /= nf90_noerr) call handle_err(status)
      status = nf90_inquire(ncid, nDimensions = nDims, &
                            unlimitedDimID = unlimdimid)
      if (status /= nf90_noerr) call handle_err(status)


Next: , Previous: NF90_INQUIRE Family, Up: Datasets

2.11 NF90_SYNC

The function NF90_SYNC offers a way to synchronize the disk copy of a netCDF dataset with in-memory buffers. There are two reasons you might want to synchronize after writes:

This function is backward-compatible with previous versions of the netCDF library. The intent was to allow sharing of a netCDF dataset among multiple readers and one writer, by having the writer call NF90_SYNC after writing and the readers call NF90_SYNC before each read. For a writer, this flushes buffers to disk. For a reader, it makes sure that the next read will be from disk rather than from previously cached buffers, so that the reader will see changes made by the writing process (e.g., the number of records written) without having to close and reopen the dataset. If you are only accessing a small amount of data, it can be expensive in computer resources to always synchronize to disk after every write, since you are giving up the benefits of buffering.

An easier way to accomplish sharing (and what is now recommended) is to have the writer and readers open the dataset with the NF90_SHARE flag, and then it will not be necessary to call NF90_SYNC at all. However, the NF90_SYNC function still provides finer granularity than the NF90_SHARE flag, if only a few netCDF accesses need to be synchronized among processes.

It is important to note that changes to the ancillary data, such as attribute values, are not propagated automatically by use of the NF90_SHARE flag. Use of the NF90_SYNC function is still required for this purpose.

Sharing datasets when the writer enters define mode to change the data schema requires extra care. In previous releases, after the writer left define mode, the readers were left looking at an old copy of the dataset, since the changes were made to a new copy. The only way readers could see the changes was by closing and reopening the dataset. Now the changes are made in place, but readers have no knowledge that their internal tables are now inconsistent with the new dataset schema. If netCDF datasets are shared across redefinition, some mechanism external to the netCDF library must be provided that prevents access by readers during redefinition and causes the readers to call NF90_SYNC before any subsequent access.

When calling NF90_SYNC, the netCDF dataset must be in data mode. A netCDF dataset in define mode is synchronized to disk only when NF90_ENDDEF is called. A process that is reading a netCDF dataset that another process is writing may call NF90_SYNC to get updated with the changes made to the data by the writing process (e.g., the number of records written), without having to close and reopen the dataset.

Data is automatically synchronized to disk when a netCDF dataset is closed, or whenever you leave define mode.

Usage

      function nf90_sync(ncid)
        integer, intent( in) :: ncid
        integer              :: nf90_sync
ncid
NetCDF ID, from a previous call to NF90_OPEN or NF90_CREATE.

Errors

NF90_SYNC returns the value NF90_NOERR if no errors occurred. Otherwise, the returned status indicates an error. Possible causes of errors include:

Example

Here is an example using NF90_SYNC to synchronize the disk writes of a netCDF dataset named foo.nc:

      use netcdf
      implicit none
      integer :: ncid, status
      ...
      status = nf90_open("foo.nc", nf90_write, ncid)
      if (status /= nf90_noerr) call handle_err(status)
      ...
      ! write data or change attributes
      ...
      status = NF90_SYNC(ncid)
      if (status /= nf90_noerr) call handle_err(status)


Next: , Previous: NF90_SYNC, Up: Datasets

2.12 NF90_ABORT

You no longer need to call this function, since it is called automatically by NF90_CLOSE in case the dataset is in define mode and something goes wrong with committing the changes. The function NF90_ABORT just closes the netCDF dataset, if not in define mode. If the dataset is being created and is still in define mode, the dataset is deleted. If define mode was entered by a call to NF90_REDEF, the netCDF dataset is restored to its state before definition mode was entered and the dataset is closed.

Usage

      function nf90_abort(ncid)
        integer, intent( in) :: ncid
        integer              :: nf90_abort
ncid
NetCDF ID, from a previous call to NF90_OPEN or NF90_CREATE.

Errors

NF90_ABORT returns the value NF90_NOERR if no errors occurred. Otherwise, the returned status indicates an error. Possible causes of errors include:

Example

Here is an example using NF90_ABORT to back out of redefinitions of a dataset named foo.nc:

      use netcdf
      implicit none
      integer :: ncid, status, LatDimID
      ...
      status = nf90_open("foo.nc", nf90_write, ncid)
      if (status /= nf90_noerr) call handle_err(status)
      ...
      status = nf90_redef(ncid)
      if (status /= nf90_noerr) call handle_err(status)
      ...
      status = nf90_def_dim(ncid, "Lat", 18, LatDimID)
      if (status /= nf90_noerr) then ! Dimension definition failed
        call handle_err(status)
        status = nf90_abort(ncid) ! Abort redefinitions
        if (status /= nf90_noerr) call handle_err(status)
      end if
     ...


Previous: NF90_ABORT, Up: Datasets

2.13 NF90_SET_FILL

This function is intended for advanced usage, to optimize writes under some circumstances described below. The function NF90_SET_FILL sets the fill mode for a netCDF dataset open for writing and returns the current fill mode in a return parameter. The fill mode can be specified as either NF90_FILL or NF90_NOFILL. The default behavior corresponding to NF90_FILL is that data is pre-filled with fill values, that is fill values are written when you create non-record variables or when you write a value beyond data that has not yet been written. This makes it possible to detect attempts to read data before it was written. See Fill Values, for more information on the use of fill values. See Attribute Conventions, for information about how to define your own fill values.

The behavior corresponding to NF90_NOFILL overrides the default behavior of prefilling data with fill values. This can be used to enhance performance, because it avoids the duplicate writes that occur when the netCDF library writes fill values that are later overwritten with data.

A value indicating which mode the netCDF dataset was already in is returned. You can use this value to temporarily change the fill mode of an open netCDF dataset and then restore it to the previous mode.

After you turn on NF90_NOFILL mode for an open netCDF dataset, you must be certain to write valid data in all the positions that will later be read. Note that nofill mode is only a transient property of a netCDF dataset open for writing: if you close and reopen the dataset, it will revert to the default behavior. You can also revert to the default behavior by calling NF90_SET_FILL again to explicitly set the fill mode to NF90_FILL.

There are three situations where it is advantageous to set nofill mode:

  1. Creating and initializing a netCDF dataset. In this case, you should set nofill mode before calling NF90_ENDDEF and then write completely all non-record variables and the initial records of all the record variables you want to initialize.
  2. Extending an existing record-oriented netCDF dataset. Set nofill mode after opening the dataset for writing, then append the additional records to the dataset completely, leaving no intervening unwritten records.
  3. Adding new variables that you are going to initialize to an existing netCDF dataset. Set nofill mode before calling NF90_ENDDEF then write all the new variables completely.

If the netCDF dataset has an unlimited dimension and the last record was written while in nofill mode, then the dataset may be shorter than if nofill mode was not set, but this will be completely transparent if you access the data only through the netCDF interfaces.

The use of this feature may not be available (or even needed) in future releases. Programmers are cautioned against heavy reliance upon this feature.

Usage

      function nf90_set_fill(ncid, fillmode, old_mode)
        integer, intent( in) :: ncid, fillmode
        integer, intent(out) :: old_mode
        integer              :: nf90_set_fill
ncid
NetCDF ID, from a previous call to NF90_OPEN or NF90_CREATE.
fillmode
Desired fill mode for the dataset, either NF90_NOFILL or NF90_FILL.
old_mode
Returned current fill mode of the dataset before this call, either NF90_NOFILL or NF90_FILL.

Errors

NF90_SET_FILL returns the value NF90_NOERR if no errors occurred. Otherwise, the returned status indicates an error. Possible causes of errors include:

Example

Here is an example using NF90_SET_FILL to set nofill mode for subsequent writes of a netCDF dataset named foo.nc:

      use netcdf
      implicit none
      integer :: ncid, status, oldMode
      ...
      status = nf90_open("foo.nc", nf90_write, ncid)
      if (status /= nf90_noerr) call handle_err(status)
      ...
      ! Write data with prefilling behavior
      ...
      status = nf90_set_fill(ncid, nf90_nofill, oldMode)
      if (status /= nf90_noerr) call handle_err(status)
      ...
      !  Write data with no prefilling
      ...


Next: , Previous: Datasets, Up: Top

3 Groups

NetCDF-4 added support for hierarchical groups within netCDF datasets.

Groups are identified with a ncid, which identifies both the open file, and the group within that file. When a file is opened with NF90_OPEN or NF90_CREATE, the ncid for the root group of that file is provided. Using that as a starting point, users can add new groups, or list and navigate existing groups.

All netCDF calls take a ncid which determines where the call will take its action. For example, the NF90_DEF_VAR function takes a ncid as its first parameter. It will create a variable in whichever group its ncid refers to. Use the root ncid provided by NF90_CREATE or NF90_OPEN to create a variable in the root group. Or use NF90_DEF_GRP to create a group and use its ncid to define a variable in the new group.

Variable are only visible in the group in which they are defined. The same applies to attributes. “Global” attributes are defined in whichever group is refered to by the ncid.

Dimensions are visible in their groups, and all child groups.

Group operations are only permitted on netCDF-4 files - that is, files created with the HDF5 flag in nf90_create. (see NF90_CREATE). Groups are not compatible with the netCDF classic data model, so files created with the NC_CLASSIC_MODEL file cannot contain groups (except the root group).


Next: , Previous: Groups, Up: Groups

3.1 Find a Group ID: NF90_INQ_NCID

Given an ncid and group name (NULL or "" gets root group), return ncid of the named group.

Usage

       function nf90_inq_ncid(ncid, name, grp_ncid)
         integer, intent(in) :: ncid
         character (len = *), intent(in) :: name
         integer, intent(out) :: grp_ncid
         integer :: nf90_inq_ncid
NCID
The group id for this operation.
NAME
A character array that holds the name of the desired group. Must be less then NF90_MAX_NAME.
GRPID
The ID of the group will go here.

Errors

NF90_NOERR
No error.
NF90_EBADID
Bad group id.
NF90_ENOTNC4
Attempting a netCDF-4 operation on a netCDF-3 file. NetCDF-4 operations can only be performed on files defined with a create mode which includes flag HDF5. (see NF90_OPEN).
NF90_ESTRICTNC3
This file was created with the strict netcdf-3 flag, therefore netcdf-4 operations are not allowed. (see NF90_OPEN).
NF90_EHDFERR
An error was reported by the HDF5 layer.

Example

This example is from nf90_test/ftst_groups.F.


   


Next: , Previous: NF90_INQ_NCID, Up: Groups

3.2 Get a List of Groups in a Group: NF90_INQ_GRPS

Given a location id, return the number of groups it contains, and an array of their ncids.

Usage

       function nf90_inq_grps(ncid, numgrps, ncids)
         integer, intent(in) :: ncid
         integer, intent(out) :: numgrps
         integer, intent(out) :: ncids
         integer :: nf90_inq_grps
NCID
The group id for this operation.
NUMGRPS
An integer which will get number of groups in this group.
NCIDS
An array of ints which will receive the IDs of all the groups in this group.

Errors

NF90_NOERR
No error.
NF90_EBADID
Bad group id.
NF90_ENOTNC4
Attempting a netCDF-4 operation on a netCDF-3 file. NetCDF-4 operations can only be performed on files defined with a create mode which includes flag HDF5. (see NF90_OPEN).
NF90_ESTRICTNC3
This file was created with the strict netcdf-3 flag, therefore netcdf-4 operations are not allowed. (see NF90_OPEN).
NF90_EHDFERR
An error was reported by the HDF5 layer.

Example



Next: , Previous: NF90_INQ_GRPS, Up: Groups

3.3 Find all the Variables in a Group: NF90_INQ_VARIDS

Find all varids for a location.

Usage

       function nf90_inq_varids(ncid, nvars, varids)
         integer, intent(in) :: ncid
         integer, intent(out) :: nvars
         integer, intent(out) :: varids
         integer :: nf90_inq_varids
NCID
The group id for this operation.
VARIDS
An already allocated array to store the list of varids. Use nf90_inq_nvars to find out how many variables there are. (see NF90_INQUIRE_VARIABLE).

Errors

NF90_NOERR
No error.
NF90_EBADID
Bad group id.
NF90_ENOTNC4
Attempting a netCDF-4 operation on a netCDF-3 file. NetCDF-4 operations can only be performed on files defined with a create mode which includes flag HDF5. (see NF90_OPEN).
NF90_ESTRICTNC3
This file was created with the strict netcdf-3 flag, therefore netcdf-4 operations are not allowed. (see NF90_OPEN).
NF90_EHDFERR
An error was reported by the HDF5 layer.

Example



Next: , Previous: NF90_INQ_VARIDS, Up: Groups

3.4 Find all Dimensions Visible in a Group: NF90_INQ_DIMIDS

Find all dimids for a location. This finds all dimensions in a group, or any of its parents.

Usage

       function nf90_inq_dimids(ncid, ndims, dimids, include_parents)
         integer, intent(in) :: ncid
         integer, intent(out) :: ndims
         integer, intent(out) :: dimids
         integer, intent(out) :: include_parents
         integer :: nf90_inq_dimids
NCID
The group id for this operation.
DIMIDS
An array of ints when the dimids of the visible dimensions will be stashed. Use nf90_inq_ndims to find out how many dims are visible from this group. (see NF90_INQUIRE_VARIABLE).
INCLUDE_PARENTS
If zero, only the group specified by NCID will be searched for dimensions. Otherwise parent groups will be searched too.

Errors

NF90_NOERR
No error.
NF90_EBADID
Bad group id.
NF90_ENOTNC4
Attempting a netCDF-4 operation on a netCDF-3 file. NetCDF-4 operations can only be performed on files defined with a create mode which includes flag HDF5. (see NF90_OPEN).
NF90_ESTRICTNC3
This file was created with the strict netcdf-3 flag, therefore netcdf-4 operations are not allowed. (see NF90_OPEN).
NF90_EHDFERR
An error was reported by the HDF5 layer.

Example



Next: , Previous: NF90_INQ_DIMIDS, Up: Groups

3.5 Find the Length of a Group's Full Name: NF90_INQ_GRPNAME_LEN

Given ncid, find length of the full name. (Root group is named "/", with length 1.)

Usage

       function nf90_inq_grpname_len(ncid, len)
         integer, intent(in) :: ncid
         integer, intent(out) :: len
         integer :: nf90_inq_grpname_len
     
         nf90_inq_grpname_len = nf_inq_grpname_len(ncid, len)
       end function nf90_inq_grpname_len
NCID
The group id for this operation.
LEN
An integer where the length will be placed.

Errors

NF90_NOERR
No error.
NF90_EBADID
Bad group id.
NF90_ENOTNC4
Attempting a netCDF-4 operation on a netCDF-3 file. NetCDF-4 operations can only be performed on files defined with a create mode which includes flag HDF5. (see NF90_OPEN).
NF90_ESTRICTNC3
This file was created with the strict netcdf-3 flag, therefore netcdf-4 operations are not allowed. (see NF90_OPEN).
NF90_EHDFERR
An error was reported by the HDF5 layer.

Example



Next: , Previous: NF90_INQ_GRPNAME_LEN, Up: Groups

3.6 Find a Group's Name: NF90_INQ_GRPNAME

Given ncid, find relative name of group. (Root group is named "/").

The name provided by this function is relative to the parent group. For a full path name for the group is, with all parent groups included, separated with a forward slash (as in Unix directory names) See NF90_INQ_GRPNAME_FULL.

Usage

       function nf90_inq_grpname(ncid, name)
         integer, intent(in) :: ncid
         character (len = *), intent(out) :: name
         integer :: nf90_inq_grpname
NCID
The group id for this operation.
NAME
The name of the group will be copied to this character array. The name will be less than NF90_MAX_NAME in length.

Errors

NF90_NOERR
No error.
NF90_EBADID
Bad group id.
NF90_ENOTNC4
Attempting a netCDF-4 operation on a netCDF-3 file. NetCDF-4 operations can only be performed on files defined with a create mode which includes flag HDF5. (see NF90_OPEN).
NF90_ESTRICTNC3
This file was created with the strict netcdf-3 flag, therefore netcdf-4 operations are not allowed. (see NF90_OPEN).
NF90_EHDFERR
An error was reported by the HDF5 layer.

Example



Next: , Previous: NF90_INQ_GRPNAME, Up: Groups

3.7 Find a Group's Full Name: NF90_INQ_GRPNAME_FULL

Given ncid, find complete name of group. (Root group is named "/").

The name provided by this function is a full path name for the group is, with all parent groups included, separated with a forward slash (as in Unix directory names). For a name relative to the parent group See NF90_INQ_GRPNAME.

To find the length of the full name See NF90_INQ_GRPNAME_LEN.

Usage

       function nf90_inq_grpname_full(ncid, len, name)
         integer, intent(in) :: ncid
         integer, intent(out) :: len
         character (len = *), intent(out) :: name
         integer :: nf90_inq_grpname_full
NCID
The group id for this operation.
LEN
The length of the full group name will go here.
NAME
The name of the group will be copied to this character array.

Errors

NF90_NOERR
No error.
NF90_EBADID
Bad group id.
NF90_ENOTNC4
Attempting a netCDF-4 operation on a netCDF-3 file. NetCDF-4 operations can only be performed on files defined with a create mode which includes flag HDF5. (see NF90_OPEN).
NF90_ESTRICTNC3
This file was created with the strict netcdf-3 flag, therefore netcdf-4 operations are not allowed. (see NF90_OPEN).
NF90_EHDFERR
An error was reported by the HDF5 layer.

Example



Next: , Previous: NF90_INQ_GRPNAME_FULL, Up: Groups

3.8 Find a Group's Parent: NF90_INQ_GRP_PARENT

Given ncid, find the ncid of the parent group.

When used with the root group, this function returns the NF90_ENOGRP error (since the root group has no parent.)

Usage

       function nf90_inq_grp_parent(ncid, parent_ncid)
         integer, intent(in) :: ncid
         integer, intent(out) :: parent_ncid
         integer :: nf90_inq_grp_parent
NCID
The group id.
PARENT_NCID
The ncid of the parent group will be copied here.

Errors

NF90_NOERR
No error.
NF90_EBADID
Bad group id.
NF90_ENOGRP
No parent group found (i.e. this is the root group).
NF90_ENOTNC4
Attempting a netCDF-4 operation on a netCDF-3 file. NetCDF-4 operations can only be performed on files defined with a create mode which includes flag HDF5. (see NF90_OPEN).
NF90_ESTRICTNC3
This file was created with the strict netcdf-3 flag, therefore netcdf-4 operations are not allowed. (see NF90_OPEN).
NF90_EHDFERR
An error was reported by the HDF5 layer.

Example



Previous: NF90_INQ_GRP_PARENT, Up: Groups

3.9 Create a New Group: NF90_DEF_GRP

Create a group. Its location id is returned in new_ncid.

Usage

       function nf90_def_grp(parent_ncid, name, new_ncid)
         integer, intent(in) :: parent_ncid
         character (len = *), intent(in) :: name
         integer, intent(out) :: new_ncid
         integer :: nf90_def_grp
PARENT_NCID
The group id of the parent group.
NAME
The name of the new group.
NEW_NCID
The ncid of the new group will be placed there.

Errors

NF90_NOERR
No error.
NF90_EBADID
Bad group id.
NF90_ENAMEINUSE
That name is in use. Group names must be unique within a group.
NF90_EMAXNAME
Name exceed max length NF90_MAX_NAME.
NF90_EBADNAME
Name contains illegal characters.
NF90_ENOTNC4
Attempting a netCDF-4 operation on a netCDF-3 file. NetCDF-4 operations can only be performed on files defined with a create mode which includes flag HDF5. (see NF90_OPEN).
NF90_ESTRICTNC3
This file was created with the strict netcdf-3 flag, therefore netcdf-4 operations are not allowed. (see NF90_OPEN).
NF90_EHDFERR
An error was reported by the HDF5 layer.
NF90_EPERM
Attempt to write to a read-only file.
NF90_ENOTINDEFINE
Not in define mode.

Example

     C     Create the netCDF file.
           retval = nf90_create(file_name, NF90_NETCDF4, ncid)
           if (retval .ne. nf90_noerr) call handle_err(retval)
     
     C     Create a group and a subgroup.
           retval = nf90_def_grp(ncid, group_name, grpid)
           if (retval .ne. nf90_noerr) call handle_err(retval)
           retval = nf90_def_grp(grpid, sub_group_name, sub_grpid)
           if (retval .ne. nf90_noerr) call handle_err(retval)


Next: , Previous: Groups, Up: Top

4 Dimensions


Next: , Previous: Dimensions, Up: Dimensions

4.1 Dimensions Introduction

Dimensions for a netCDF dataset are defined when it is created, while the netCDF dataset is in define mode. Additional dimensions may be added later by reentering define mode. A netCDF dimension has a name and a length. At most one dimension in a netCDF dataset can have the unlimited length, which means variables using this dimension can grow along this dimension.

There is a suggested limit (512) to the number of dimensions that can be defined in a single netCDF dataset. The limit is the value of the constant NF90_MAX_DIMS. The purpose of the limit is to make writing generic applications simpler. They need only provide an array of NF90_MAX_DIMS dimensions to handle any netCDF dataset. The implementation of the netCDF library does not enforce this advisory maximum, so it is possible to use more dimensions, if necessary, but netCDF utilities that assume the advisory maximums may not be able to handle the resulting netCDF datasets.

Ordinarily, the name and length of a dimension are fixed when the dimension is first defined. The name may be changed later, but the length of a dimension (other than the unlimited dimension) cannot be changed without copying all the data to a new netCDF dataset with a redefined dimension length.

A netCDF dimension in an open netCDF dataset is referred to by a small integer called a dimension ID. In the Fortran 90 interface, dimension IDs are 1, 2, 3, ..., in the order in which the dimensions were defined.

Operations supported on dimensions are:


Next: , Previous: Dimensions Introduction, Up: Dimensions

4.2 NF90_DEF_DIM

The function NF90_DEF_DIM adds a new dimension to an open netCDF dataset in define mode. It returns (as an argument) a dimension ID, given the netCDF ID, the dimension name, and the dimension length. At most one unlimited length dimension, called the record dimension, may be defined for each netCDF dataset.

Usage

      function nf90_def_dim(ncid, name, len, dimid)
        integer,             intent( in) :: ncid
        character (len = *), intent( in) :: name
        integer,             intent( in) :: len
        integer,             intent(out) :: dimid
        integer                          :: nf90_def_dim
ncid
NetCDF ID, from a previous call to NF90_OPEN or NF90_CREATE.
name
Dimension name. Must begin with an alphabetic character, followed by zero or more alphanumeric characters including the underscore ('_'). Case is significant.
len
Length of dimension; that is, number of values for this dimension as an index to variables that use it. This should be either a positive integer or the predefined constant NF90_UNLIMITED.
dimid
Returned dimension ID.

Errors

NF90_DEF_DIM returns the value NF90_NOERR if no errors occurred. Otherwise, the returned status indicates an error. Possible causes of errors include:

Example

Here is an example using NF90_DEF_DIM to create a dimension named lat of length 18 and a unlimited dimension named rec in a new netCDF dataset named foo.nc:

      use netcdf
      implicit none
      integer :: ncid, status, LatDimID, RecordDimID
      ...
      status = nf90_create("foo.nc", nf90_noclobber, ncid)
      if (status /= nf90_noerr) call handle_err(status)
      ...
      status = nf90_def_dim(ncid, "Lat", 18, LatDimID)
      if (status /= nf90_noerr) call handle_err(status)
      status = nf90_def_dim(ncid, "Record", nf90_unlimited, RecordDimID)
      if (status /= nf90_noerr) call handle_err(status)


Next: , Previous: NF90_DEF_DIM, Up: Dimensions

4.3 NF90_INQ_DIMID

The function NF90_INQ_DIMID returns (as an argument) the ID of a netCDF dimension, given the name of the dimension. If ndims is the number of dimensions defined for a netCDF dataset, each dimension has an ID between 1 and ndims.

Usage

      function nf90_inq_dimid(ncid, name, dimid)
        integer,             intent( in) :: ncid
        character (len = *), intent( in) :: name
        integer,             intent(out) :: dimid
        integer                          :: nf90_inq_dimid
ncid
NetCDF ID, from a previous call to NF90_OPEN or NF90_CREATE.
name
Dimension name, a character string beginning with a letter and followed by any sequence of letters, digits, or underscore ('_') characters. Case is significant in dimension names.
dimid
Returned dimension ID.

Errors

NF90_INQ_DIMID returns the value NF90_NOERR if no errors occurred. Otherwise, the returned status indicates an error. Possible causes of errors include:

Example

Here is an example using NF90_INQ_DIMID to determine the dimension ID of a dimension named lat, assumed to have been defined previously in an existing netCDF dataset named foo.nc:

      use netcdf
      implicit none
      integer :: ncid, status, LatDimID
      ...
      status = nf90_open("foo.nc", nf90_nowrite, ncid)
      if (status /= nf90_noerr) call handle_err(status)
      ...
      status = nf90_inq_dimid(ncid, "Lat", LatDimID)
      if (status /= nf90_noerr) call handle_err(status)


Next: , Previous: NF90_INQ_DIMID, Up: Dimensions

4.4 NF90_INQUIRE_DIMENSION

This function information about a netCDF dimension. Information about a dimension includes its name and its length. The length for the unlimited dimension, if any, is the number of records written so far.

Usage

      function nf90_inquire_dimension(ncid, dimid, name, len)
        integer,                       intent( in) :: ncid, dimid
        character (len = *), optional, intent(out) :: name
        integer,             optional, intent(out) :: len
        integer                                    :: nf90_inquire_dimension
ncid
NetCDF ID, from a previous call to NF90_OPEN or NF90_CREATE.
dimid
Dimension ID, from a previous call to NF90_INQ_DIMID or NF90_DEF_DIM.
name
Returned dimension name. The caller must allocate space for the returned name. The maximum possible length, in characters, of a dimension name is given by the predefined constant NF90_MAX_NAME.
len
Returned length of dimension. For the unlimited dimension, this is the current maximum value used for writing any variables with this dimension, that is the maximum record number.

Errors

These functions return the value NF90_NOERR if no errors occurred. Otherwise, the returned status indicates an error. Possible causes of errors include:

Example

Here is an example using NF90_INQ_DIM to determine the length of a dimension named lat, and the name and current maximum length of the unlimited dimension for an existing netCDF dataset named foo.nc:

      use netcdf
      implicit none
      integer :: ncid, status, LatDimID, RecordDimID
      integer :: nLats, nRecords
      character(len = nf90_max_name) :: RecordDimName
      ...
      status = nf90_open("foo.nc", nf90_nowrite, ncid)
      if (status /= nf90_noerr) call handle_err(status)
      ! Get ID of unlimited dimension
      status = nf90_inquire(ncid, unlimitedDimId = RecordDimID)
      if (status /= nf90_noerr) call handle_err(status)
      ...
      status = nf90_inq_dimid(ncid, "Lat", LatDimID)
      if (status /= nf90_noerr) call handle_err(status)
      ! How many values of "lat" are there?
      status = nf90_inquire_dimension(ncid, LatDimID, len = nLats)
      if (status /= nf90_noerr) call handle_err(status)
      ! What is the name of the unlimited dimension, how many records are there?
      status = nf90_inquire_dimension(ncid, RecordDimID, &
                                      name = RecordDimName, len = Records)
      if (status /= nf90_noerr) call handle_err(status)


Previous: NF90_INQUIRE_DIMENSION, Up: Dimensions

4.5 NF90_RENAME_DIM

The function NF90_RENAME_DIM renames an existing dimension in a netCDF dataset open for writing. If the new name is longer than the old name, the netCDF dataset must be in define mode. You cannot rename a dimension to have the same name as another dimension.

Usage

      function nf90_rename_dim(ncid, dimid, name)
        integer,             intent( in) :: ncid
        character (len = *), intent( in) :: name
        integer,             intent( in) :: dimid
        integer                          :: nf90_rename_dim
ncid
NetCDF ID, from a previous call to NF90_OPEN or NF90_CREATE.
dimid
Dimension ID, from a previous call to NF90_INQ_DIMID or NF90_DEF_DIM.
name
New dimension name.

Errors

NF90_RENAME_DIM returns the value NF90_NOERR if no errors occurred. Otherwise, the returned status indicates an error. Possible causes of errors include:

Example

Here is an example using NF90_RENAME_DIM to rename the dimension lat to latitude in an existing netCDF dataset named foo.nc:

      use netcdf
      implicit none
      integer :: ncid, status, LatDimID
      ...
      status = nf90_open("foo.nc", nf90_write, ncid)
      if (status /= nf90_noerr) call handle_err(status)
      ...
      ! Put in define mode so we can rename the dimension
      status = nf90_redef(ncid)
      if (status /= nf90_noerr) call handle_err(status)
      ! Get the dimension ID for "Lat"...
      status = nf90_inq_dimid(ncid, "Lat", LatDimID)
      if (status /= nf90_noerr) call handle_err(status)
      ! ... and change the name to "Latitude".
      status = nf90_rename_dim(ncid, LatDimID, "Latitude")
      if (status /= nf90_noerr) call handle_err(status)
      ! Leave define mode
      status = nf90_enddef(ncid)
      if (status /= nf90_noerr) call handle_err(status)


Next: , Previous: Dimensions, Up: Top

5 User Defined Data Types


Next: , Previous: User Defined Data Types, Up: User Defined Data Types

5.1 User Defined Types Introduction

NetCDF-4 has added support for four different user defined data types.

compound type
Like a C struct, a compound type is a collection of types, including other user defined types, in one package.
variable length array type
The variable length array may be used to store ragged arrays.
opaque type
This type has only a size per element, and no other type information.
enum type
Like an enumeration in C, this type lets you assign text values to integer values, and store the integer values.

Users may construct user defined type with the various nf90_def_* functions described in this section. They may learn about user defined types by using the nf90_inq_ functions defined in this section.


Next: , Previous: User Defined Types, Up: User Defined Data Types

5.2 Learn the IDs of All Types in Group: NF90_INQ_TYPEIDS

Learn the number of types defined in a group, and their IDs.

Usage

       function nf90_inq_typeids(ncid, ntypes, typeids)
         integer, intent(in) :: ncid
         integer, intent(out) :: ntypes
         integer, intent(out) :: typeids
         integer :: nf90_inq_typeids
NCID
The group id.
NTYPES
A pointer to int which will get the number of types defined in the group. If NULL, ignored.
TYPEIDS
A pointer to an int array which will get the typeids. If NULL, ignored.

Errors

NF90_NOERR
No error.
NF90_BADID
Bad ncid.

Example



Next: , Previous: NF90_INQ_TYPEIDS, Up: User Defined Data Types

5.3 Learn About an User Defined Type: NF90_INQ_TYPE

Given an ncid and a typeid, get the information about a type. This function will work on any type, including atomic and any user defined type, whether compound, opaque, enumeration, or variable length array.

For even more information about a user defined type NF90_INQ_USER_TYPE.

Usage

       function nf90_inq_type(ncid, xtype, name, size, nfields)
         integer, intent(in) :: ncid
         integer, intent(in) :: xtype
         character (len = *), intent(out) :: name
         integer, intent(out) :: size
         integer, intent(out) :: nfields
         integer :: nf90_inq_type
NCID
The ncid for the group containing the type (ignored for atomic types).
XTYPE
The typeid for this type, as returned by NF90_DEF_COMPOUND, NF90_DEF_OPAQUE, NF90_DEF_ENUM, NF90_DEF_VLEN, or NF90_INQ_VAR, or as found in netcdf.inc in the list of atomic types (NF90_CHAR, NF90_INT, etc.).
NAME
The name of the user defined type will be copied here. It will be NF90_MAX_NAME bytes or less. For atomic types, the type name from CDL will be given.
SIZEP
The size of the type (in bytes) will be copied here. VLEN type size is the size of one element of the VLEN. String size is returned as zero, since it varies from string to string.

Return Codes

NF90_NOERR
No error.
NF90_EBADTYPEID
Bad typeid.
NF90_ENOTNC4
Seeking a user-defined type in a netCDF-3 file.
NF90_ESTRICTNC3
Seeking a user-defined type in a netCDF-4 file for which classic model has been turned on.
NF90_EBADGRPID
Bad group ID in ncid.
NF90_EBADID
Type ID not found.
NF90_EHDFERR
An error was reported by the HDF5 layer.

Example



Next: , Previous: NF90_INQ_TYPE, Up: User Defined Data Types

5.4 Learn About an User Defined Type: NF90_INQ_USER_TYPE

Given an ncid and a typeid, get the information about a user defined type. This function will work on any user defined type, whether compound, opaque, enumeration, or variable length array.

Usage

       function nf90_inq_user_type(ncid, xtype, name, size, base_typeid, nfields, class)
         integer, intent(in) :: ncid
         integer, intent(in) :: xtype
         character (len = *), intent(out) :: name
         integer, intent(out) :: size
         integer, intent(out) :: base_typeid
         integer, intent(out) :: nfields
         integer, intent(out) :: class
         integer :: nf90_inq_user_type
NCID
The ncid for the group containing the user defined type.
XTYPE
The typeid for this type, as returned by NF90_DEF_COMPOUND, NF90_DEF_OPAQUE, NF90_DEF_ENUM, NF90_DEF_VLEN, or NF90_INQ_VAR.
NAME
The name of the user defined type will be copied here. It will be NF90_MAX_NAME bytes or less.
SIZE
The size of the user defined type will be copied here.
BASE_NF90_TYPE
The base typeid will be copied here for vlen and enum types.
NFIELDS
The number of fields will be copied here for enum and compound types.
CLASS
The class of the user defined type, NF90_VLEN, NF90_OPAQUE, NF90_ENUM, or NF90_COMPOUND, will be copied here.

Errors

NF90_NOERR
No error.
NF90_EBADTYPEID
Bad typeid.
NF90_EBADFIELDID
Bad fieldid.
NF90_EHDFERR
An error was reported by the HDF5 layer.

Example





Next: , Previous: NF90_INQ_USER_TYPE, Up: NF90_INQ_USER_TYPE

5.4.1 Set a Variable Length Array with NF90_PUT_VLEN_ELEMENT

Use this to set the element of the (potentially) n-dimensional array of VLEN. That is, this sets the data in one variable length array.

Usage

     INTEGER FUNCTION NF90_PUT_VLEN_ELEMENT(INTEGER NCID, INTEGER XTYPE,
             CHARACTER*(*) VLEN_ELEMENT, INTEGER LEN, DATA)
NCID
The ncid of the file that contains the VLEN type.
XTYPE
The type of the VLEN.
VLEN_ELEMENT
The VLEN element to be set.
LEN
The number of entries in this array.
DATA
The data to be stored. Must match the base type of this VLEN.

Errors

NF90_NOERR
No error.
NF90_EBADTYPE
Can't find the typeid.
NF90_EBADID
ncid invalid.
NF90_EBADGRPID
Group ID part of ncid was invalid.

Example

This example is from nf90_test/ftst_vars4.F.

     C     Set up the vlen with this helper function, since F77 can't deal
     C     with pointers.
           retval = nf90_put_vlen_element(ncid, vlen_typeid, vlen,
          &     vlen_len, data1)
           if (retval .ne. nf90_noerr) call handle_err(retval)


Previous: NF90_PUT_VLEN_ELEMENT, Up: NF90_INQ_USER_TYPE

5.4.2 Set a Variable Length Array with NF90_GET_VLEN_ELEMENT

Use this to set the element of the (potentially) n-dimensional array of VLEN. That is, this sets the data in one variable length array.

Usage

     INTEGER FUNCTION NF90_GET_VLEN_ELEMENT(INTEGER NCID, INTEGER XTYPE,
             CHARACTER*(*) VLEN_ELEMENT, INTEGER LEN, DATA)
NCID
The ncid of the file that contains the VLEN type.
XTYPE
The type of the VLEN.
VLEN_ELEMENT
The VLEN element to be set.
LEN
This will be set to the number of entries in this array.
DATA
The data will be copied here. Sufficient storage must be available or bad things will happen to you.

Errors

NF90_NOERR
No error.
NF90_EBADTYPE
Can't find the typeid.
NF90_EBADID
ncid invalid.
NF90_EBADGRPID
Group ID part of ncid was invalid.

Example



Next: , Previous: NF90_INQ_USER_TYPE, Up: User Defined Data Types

5.5 Compound Types Introduction

NetCDF-4 added support for compound types, which allow users to construct a new type - a combination of other types, like a C struct.

Compound types are not supported in classic or 64-bit offset format files.

To write data in a compound type, first use nf90_def_compound to create the type, multiple calls to nf90_insert_compound to add to the compound type, and then write data with the appropriate nf90_put_var1, nf90_put_vara, nf90_put_vars, or nf90_put_varm call.

To read data written in a compound type, you must know its structure. Use the NF90_INQ_COMPOUND functions to learn about the compound type.

In Fortran a character buffer must be used for the compound data. The user must read the data from within that buffer in the same way that the C compiler which compiled netCDF would store the structure.

The use of compound types introduces challenges and portability issues for Fortran users.


Next: , Previous: Compound Types, Up: Compound Types

5.5.1 Creating a Compound Type: NF90_DEF_COMPOUND

Create a compound type. Provide an ncid, a name, and a total size (in bytes) of one element of the completed compound type.

After calling this function, fill out the type with repeated calls to NF90_INSERT_COMPOUND (see NF90_INSERT_COMPOUND). Call NF90_INSERT_COMPOUND once for each field you wish to insert into the compound type.

Note that there does not seem to be a fully portable way to read such types into structures in Fortran 90 (and there are no structures in Fortran 77). Dozens of top-notch programmers are swarming over this problem in a sub-basement of Unidata's giant underground bunker in Wyoming.

Fortran users may use character buffers to read and write compound types. User are invited to try classic Fortran features such as the equivilence and the common block statment.

Usage

       function nf90_def_compound(ncid, size, name, typeid)
         integer, intent(in) :: ncid
         integer, intent(in) :: size
         character (len = *), intent(in) :: name
         integer, intent(out) :: typeid
         integer :: nf90_def_compound
NCID
The groupid where this compound type will be created.
SIZE
The size, in bytes, of the compound type.
NAME
The name of the new compound type.
TYPEIDP
The typeid of the new type will be placed here.

Errors

NF90_NOERR
No error.
NF90_EBADID
Bad group id.
NF90_ENAMEINUSE
That name is in use. Compound type names must be unique in the data file.
NF90_EMAXNAME
Name exceeds max length NF90_MAX_NAME.
NF90_EBADNAME
Name contains illegal characters.
NF90_ENOTNC4
Attempting a netCDF-4 operation on a netCDF-3 file. NetCDF-4 operations can only be performed on files defined with a create mode which includes flag NF90_NETCDF4. (see NF90_OPEN).
NF90_ESTRICTNC3
This file was created with the strict netcdf-3 flag, therefore netcdf-4 operations are not allowed. (see NF90_OPEN).
NF90_EHDFERR
An error was reported by the HDF5 layer.
NF90_EPERM
Attempt to write to a read-only file.
NF90_ENOTINDEFINE
Not in define mode.

Example



Next: , Previous: NF90_DEF_COMPOUND, Up: Compound Types

5.5.2 Inserting a Field into a Compound Type: NF90_INSERT_COMPOUND

Insert a named field into a compound type.

Usage

       function nf90_insert_compound(ncid, xtype, name, offset, field_typeid)
         integer, intent(in) :: ncid
         integer, intent(in) :: xtype
         character (len = *), intent(in) :: name
         integer, intent(in) :: offset
         integer, intent(in) :: field_typeid
         integer :: nf90_insert_compound
TYPEID
The typeid for this compound type, as returned by NF90_DEF_COMPOUND, or NF90_INQ_VAR.
NAME
The name of the new field.
OFFSET<