ucar.nc2.dataset
Class CoordinateAxis1D

java.lang.Object
  ucar.nc2.Variable
      ucar.nc2.dataset.VariableDS
          ucar.nc2.dataset.CoordinateAxis
              ucar.nc2.dataset.CoordinateAxis1D

All Implemented Interfaces:

java.lang.Comparable<VariableSimpleIF>, Enhancements, EnhanceScaleMissing, VariableEnhanced, VariableIF, VariableSimpleIF

Direct Known Subclasses:

CoordinateAxis1DTime

public class CoordinateAxis1D
extends CoordinateAxis

A 1-dimensional Coordinate Axis. Its values must be monotonic. If this is char valued, it will have rank 2, otherwise it will have rank 1.

If string or char valued, only getCoordName() can be called.

If the coordinates are regularly spaced, isRegular() is true, and the values are equal to getStart() + i * getIncrement().

Author:

john caron

See Also:

CoordinateAxis.factory(ucar.nc2.dataset.NetcdfDataset, ucar.nc2.dataset.VariableDS)

Nested Class Summary

Nested classes/interfaces inherited from class ucar.nc2.dataset.CoordinateAxis

CoordinateAxis.AxisComparator

Field Summary

Fields inherited from class ucar.nc2.dataset.CoordinateAxis

POSITIVE_DOWN, POSITIVE_UP

Fields inherited from class ucar.nc2.Variable

defaultSizeToCache

Constructor Summary

CoordinateAxis1D(NetcdfDataset ds, Group group, java.lang.String shortName, DataType dataType, java.lang.String dims, java.lang.String units, java.lang.String desc)
Constructor when theres no underlying variable.

CoordinateAxis1D(NetcdfDataset ncd, VariableDS vds)
Create a 1D coordinate axis from an existing Variable

Method Summary

int	findCoordElement(double pos) Given a coordinate position, find what grid element contains it.
int	findCoordElement(double pos, int lastIndex) Given a coordinate position, find what grid element contains it.
int	findCoordElementBounded(double pos) Given a coordinate position, find what grid element contains it, but always return valid index.
int	findCoordElementBounded(double pos, int lastIndex) Given a coordinate position, find what grid element contains it, but always return valid index.
double[]	getBound1() Get the coordinate bound1 as a double array.
double[]	getBound2() Get the coordinate bound1 as a double array.
double	getCoordEdge(int index) Get the ith coordinate edge.
double[]	getCoordEdges() Get the coordinate edges as a double array.
double[]	getCoordEdges(int i) Get the coordinate edges for the ith coordinate.
java.lang.String	getCoordName(int index) The "name" of the ith coordinate.
double	getCoordValue(int index) Get the ith coordinate value.
double[]	getCoordValues() Get the coordinate values as a double array.
double	getIncrement()
int	getIndex(java.lang.String name) Get the index corresponding to the name.
double	getMaxValue()
double	getMinValue()
java.util.List<NamedObject>	getNames() Get the list of names, to be used for user selection.
double	getStart()
boolean	isLayer() Caution: many datasets do not explicitly specify this info, this is often a guess; default is false.
boolean	isRegular() If true, then value(i) = getStart() + i * getIncrement().
CoordinateAxis	makeCopy()
CoordinateAxis1D	section(Range r) Create a new CoordinateAxis1D as a section of this CoordinateAxis1D.
void	setLayer(boolean isLayer) Set if coordinate lies between a layer, or is at a point.

Methods inherited from class ucar.nc2.dataset.CoordinateAxis

equals, factory, getAxisType, getBoundaryRef, getInfo, getPositive, getUnitsString, hashCode, isContiguous, isNumeric, setAxisType, setBoundaryRef, setContiguous, setPositive

Methods inherited from class ucar.nc2.dataset.VariableDS

addCoordinateSystem, convertScaleOffsetMissing, convertScaleOffsetMissing, convertScaleOffsetMissing, convertScaleOffsetMissing, convertScaleOffsetMissing, convertScaleOffsetMissing, enhance, getCoordinateSystems, getDescription, getOriginalDataType, getOriginalName, getOriginalVariable, getProxyReader, getUseNaNs, getValidMax, getValidMin, hasFillValue, hasInvalidData, hasMissing, hasMissingValue, hasScaleOffset, isCoordinateVariable, isFillValue, isInvalidData, isMissing, isMissingFast, isMissingValue, removeCoordinateSystem, setFillValueIsMissing, setInvalidDataIsMissing, setMissingDataIsMissing, setName, setOriginalVariable, setProxyReader, setUnitsString, setUseNaNs, toStringDebug

Methods inherited from class ucar.nc2.Variable

addAttribute, compareTo, createNewCache, findAttribute, findAttributeIgnoreCase, findDimensionIndex, getAttributes, getDataType, getDimension, getDimensions, getDimensionsAll, getDimensionsString, getElementSize, getName, getNameAndDimensions, getNameAndDimensions, getNameAndDimensions, getNameAndDimensions, getNameEscaped, getParentGroup, getParentStructure, getRanges, getRank, getShape, getShapeAsSection, getShortName, getSize, getSizeToCache, getSPobject, hasCachedData, invalidateCache, isCaching, isImmutable, isMemberOfStructure, isMetadata, isScalar, isUnknownLength, isUnlimited, isUnsigned, isVariableLength, lookupEnumString, read, read, read, read, read, readScalarByte, readScalarDouble, readScalarFloat, readScalarInt, readScalarLong, readScalarShort, readScalarString, remove, removeAttribute, resetDimensions, resetShape, section, section, setCachedData, setCaching, setDataType, setDimension, setDimensions, setDimensions, setDimensionsAnonymous, setElementSize, setEnumTypedef, setImmutable, setIsScalar, setParentGroup, setParentStructure, setSizeToCache, setSPobject, slice, toString, writeCDL

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ucar.nc2.VariableIF

findAttribute, findAttributeIgnoreCase, findDimensionIndex, getAttributes, getDataType, getDimension, getDimensions, getDimensionsAll, getElementSize, getName, getNameAndDimensions, getNameEscaped, getParentGroup, getParentStructure, getRanges, getRank, getShape, getShapeAsSection, getShortName, getSize, isMemberOfStructure, isMetadata, isScalar, isUnlimited, isUnsigned, isVariableLength, read, read, read, read, readScalarByte, readScalarDouble, readScalarFloat, readScalarInt, readScalarLong, readScalarShort, readScalarString, section

Methods inherited from interface java.lang.Comparable

compareTo

Constructor Detail

CoordinateAxis1D

public CoordinateAxis1D(NetcdfDataset ncd,
                        VariableDS vds)

Create a 1D coordinate axis from an existing Variable

Parameters:

ncd - the containing dataset

vds - wrap this VariableDS, which is not changed.

CoordinateAxis1D

public CoordinateAxis1D(NetcdfDataset ds,
                        Group group,
                        java.lang.String shortName,
                        DataType dataType,
                        java.lang.String dims,
                        java.lang.String units,
                        java.lang.String desc)

Constructor when theres no underlying variable. You better set the values too!

Parameters:

ds - the containing dataset.

group - the containing group; if null, use rootGroup

shortName - axis name.

dataType - data type

dims - list of dimension names

units - units of coordinates, preferably udunit compatible.

desc - long name.

Method Detail

makeCopy

public CoordinateAxis makeCopy()

Overrides:

makeCopy in class CoordinateAxis

section

public CoordinateAxis1D section(Range r)
                         throws InvalidRangeException

Create a new CoordinateAxis1D as a section of this CoordinateAxis1D.

Parameters:

r - the section range

Returns:

a new CoordinateAxis1D as a section of this CoordinateAxis1D

Throws:

InvalidRangeException - if IllegalRange

getCoordName

public java.lang.String getCoordName(int index)

The "name" of the ith coordinate. If nominal, this is all there is to a coordinate. If numeric, this will return a String representation of the coordinate.

Parameters:

index - which one ?

Returns:

the ith coordinate value as a String

getCoordValue

public double getCoordValue(int index)

Get the ith coordinate value. This is the value of the coordinate axis at which the data value is associated. These must be strictly monotonic.

Parameters:

index - which coordinate. Between 0 and getNumElements()-1 inclusive.

Returns:

coordinate value.

Throws:

java.lang.UnsupportedOperationException - if !isNumeric()

getMinValue

public double getMinValue()

Overrides:

getMinValue in class CoordinateAxis

Returns:

the minimum coordinate value

getMaxValue

public double getMaxValue()

Overrides:

getMaxValue in class CoordinateAxis

Returns:

the maximum coordinate value

getCoordEdge

public double getCoordEdge(int index)

Get the ith coordinate edge. Exact only if isContiguous() is true, otherwise use getBound1() and getBound2(). This is the value where the underlying grid element switches from "belonging to" coordinate value i-1 to "belonging to" coordinate value i. In some grids, this may not be well defined, and so should be considered an approximation or a visualization hint.

  Coordinate edges must be strictly monotonic:
    coordEdge(0) < coordValue(0) < coordEdge(1) < coordValue(1) ...
    ... coordEdge(i) < coordValue(i) < coordEdge(i+1) < coordValue(i+1) ...
    ... coordEdge(n-1) < coordValue(n-1) < coordEdge(n)
  

Parameters:

index - which coordinate. Between 0 and getNumElements() inclusive.

Returns:

coordinate edge.

Throws:

java.lang.UnsupportedOperationException - if !isNumeric()

getCoordValues

public double[] getCoordValues()

Get the coordinate values as a double array.

Returns:

coordinate value.

Throws:

java.lang.UnsupportedOperationException - if !isNumeric()

getCoordEdges

public double[] getCoordEdges()

Get the coordinate edges as a double array. Exact only if isContiguous() is true, otherwise use getBound1() and getBound2().

Returns:

coordinate edges.

Throws:

java.lang.UnsupportedOperationException - if !isNumeric()

getBound1

public double[] getBound1()

Get the coordinate bound1 as a double array. bound1[i] # coordValue[i] # bound2[i], where # is < if increasing (bound1[i] < bound1[i+1]) else < if decreasing.

Returns:

coordinate bound1.

Throws:

java.lang.UnsupportedOperationException - if !isNumeric()

getBound2

public double[] getBound2()

Get the coordinate bound1 as a double array. bound1[i] # coordValue[i] # bound2[i], where # is < if increasing (bound1[i] < bound1[i+1]) else < if decreasing.

Returns:

coordinate bound2.

Throws:

java.lang.UnsupportedOperationException - if !isNumeric()

getCoordEdges

public double[] getCoordEdges(int i)

Get the coordinate edges for the ith coordinate. Can use this for isContiguous() true or false.

Parameters:

i - coordinate index

Returns:

double[2] edges for ith coordinate

findCoordElement

public int findCoordElement(double pos)

Given a coordinate position, find what grid element contains it. This means that

    edge[i] <= pos < edge[i+1] (if values are ascending)
    edge[i] > pos >= edge[i+1] (if values are descending)
    

Parameters:

pos - position in this coordinate system

Returns:

index of grid point containing it, or -1 if outside grid area

findCoordElement

public int findCoordElement(double pos,
                            int lastIndex)

Given a coordinate position, find what grid element contains it. This means that

    edge[i] <= pos < edge[i+1] (if values are ascending)
    edge[i] > pos >= edge[i+1] (if values are descending)
    

Parameters:

pos - position in this coordinate system

lastIndex - last position we looked for, or -1 if none

Returns:

index of grid point containing it, or -1 if outside grid area

findCoordElementBounded

public int findCoordElementBounded(double pos)

Given a coordinate position, find what grid element contains it, but always return valid index.

Parameters:

pos - position in this coordinate system

Returns:

index of grid point containing it

findCoordElementBounded

public int findCoordElementBounded(double pos,
                                   int lastIndex)

Given a coordinate position, find what grid element contains it, but always return valid index. This means that

      if values are ascending:
        pos < edge[0] return 0
        edge[n] < pos return n-1
        edge[i] <= pos < edge[i+1] return i

      if values are descending:
        pos > edge[0] return 0
        edge[n] > pos return n-1
        edge[i] > pos >= edge[i+1] return i
    

Parameters:

pos - position in this coordinate system

lastIndex - last position we looked for, or -1 if none

Returns:

index of grid point containing it

getStart

public double getStart()

Returns:

Starting value if isRegular()

getIncrement

public double getIncrement()

Returns:

Increment value if isRegular()

isLayer

public boolean isLayer()

Caution: many datasets do not explicitly specify this info, this is often a guess; default is false.

Returns:

true if coordinate lies between a layer, or false if its at a point.

setLayer

public void setLayer(boolean isLayer)

Set if coordinate lies between a layer, or is at a point.

Parameters:

isLayer - true if coordinate lies between a layer, or false if its at a point

isRegular

public boolean isRegular()

If true, then value(i) = getStart() + i * getIncrement().

Returns:

if evenly spaced.

getNames

public java.util.List<NamedObject> getNames()

Get the list of names, to be used for user selection. The ith one refers to the ith coordinate.

Returns:

List of ucar.nc2.util.NamedObject, or empty list.

getIndex

public int getIndex(java.lang.String name)

Get the index corresponding to the name. Reverse of getCoordName(i)

Parameters:

name - getCoordName(i)

Returns:

index, or -1 if not found