ucar.nc2.dataset
Class CoordinateAxis

java.lang.Object
  ucar.nc2.Variable
      ucar.nc2.dataset.VariableDS
          ucar.nc2.dataset.CoordinateAxis

All Implemented Interfaces:

java.lang.Comparable, Enhancements, EnhanceScaleMissing, VariableEnhanced, VariableIF, VariableSimpleIF

Direct Known Subclasses:

CoordinateAxis1D, CoordinateAxis2D

public class CoordinateAxis
extends VariableDS
implements java.lang.Comparable

A Coordinate Axis is a Variable that specifies one of the coordinates of a CoordinateSystem. Mathematically it is a scalar function F from index space to S:

  F:D -> S
  where D is a product set of dimensions (aka index space), and S is the set of reals (R) or Strings.
 

If its element type is char, this it is a string-valued Coordinate Axis of rank-1, where the outermost dimension is considered the string length: v(i, j, .. strlen); Otherwise it is numeric-valued, and isNumeric() is true.

The one-dimensional case F(i) -> R is the common case which affords important optimizations. In that case, use the subtype CoordinateAxis1D. The factory methods will return either a CoordinateAxis1D if the variable is one-dimensional, a CoordinateAxis2D if its 2D, or a CoordinateAxis for the general case.

A CoordinateAxis is optionally marked as georeferencing with an AxisType. It should have a units string and optionally a description string.

Version:

$Revision:51 $ $Date:2006-07-12 17:13:13Z $

Author:

john caron

See Also:

"NCML documentation"

Nested Class Summary

static class

CoordinateAxis.AxisComparator Standard sort on Coordinate Axes

Nested classes/interfaces inherited from class ucar.nc2.Variable

Variable.Cache

Field Summary

protected AxisType	axisType
protected java.lang.String	boundaryRef
protected boolean	isContiguous
protected java.lang.String	positive
static java.lang.String	POSITIVE_DOWN
static java.lang.String	POSITIVE_UP

Fields inherited from class ucar.nc2.Variable

attributes, cache, dataType, debugCaching, defaultSizeToCache, dimensions, elementSize, group, isCoordinateAxis, isMetadata, isSection, isSlice, isVlen, ncfile, orgVar, parent, scalarIndex, sectionRanges, shape, shortName, sizeToCache, sliceDim, sliceRanges

Constructor Summary

	CoordinateAxis(NetcdfDataset ds, Group group, java.lang.String shortName, DataType dataType, java.lang.String dims, java.lang.String units, java.lang.String desc) Constructor when theres no underlying variable.
protected	CoordinateAxis(Variable vds) Create a coordinate axis from an existing Variable.

Method Summary

protected boolean	cacheOK()
int	compareTo(java.lang.Object o) Use the name to sort on
boolean	equals(java.lang.Object oo) Instances which have same content are equal.
static CoordinateAxis	factory(NetcdfDataset dataset, VariableDS vds) Create a coordinate axis from an existing Variable.
AxisType	getAxisType() Get type of axis, or null if none.
java.lang.String	getBoundaryRef() Get the name of this coordinate axis' boundary variable, or null if none.
java.lang.String	getInfo() formatted string representation
double	getMaxValue() Get the minimum coordinate value
double	getMinValue() Get the maximum coordinate value
java.lang.String	getPositive() Get the direction of increasing values, used only for vertical Axes.
java.lang.String	getUnitsString() Get the Unit String for the Variable.
int	hashCode() Override Object.hashCode() to implement equals.
boolean	isContiguous() If the edges are contiguous or disjoint.
boolean	isNumeric() If the CoordAxis is numeric or string valued.
void	setAxisType(AxisType axisType) Set type of axis, or null if none.
void	setBoundaryRef(java.lang.String boundaryRef) Set a reference to a boundary variable.
void	setContiguous(boolean isContiguous) Set if the edges are contiguous or disjoint.
void	setPositive(java.lang.String positive) Set the direction of increasing values, used only for vertical Axes.

Methods inherited from class ucar.nc2.dataset.VariableDS

_read, _read, _readMemberData, addCoordinateSystem, convertScaleOffsetMissing, convertScaleOffsetMissing, convertScaleOffsetMissing, convertScaleOffsetMissing, convertScaleOffsetMissing, enhance, getCoordinateSystems, getDescription, getOriginalDataType, getOriginalVariable, getProxyReader, getUnitString, getValidMax, getValidMin, hasFillValue, hasInvalidData, hasMissing, hasMissingValue, hasScaleOffset, isEnhanced, isFillValue, isInvalidData, isMissing, isMissingValue, removeCoordinateSystem, section, setFillValueIsMissing, setInvalidDataIsMissing, setMissingDataIsMissing, setProxyReader, setUnitsString, setUseNaNs, slice

Methods inherited from class ucar.nc2.Variable

addAttribute, attributes, calcIsCoordinateVariable, extraInfo, findAttribute, findAttributeIgnoreCase, findDimensionIndex, getAttributes, getCoordinateDimension, getDataType, getDimension, getDimensions, getDimensionsAll, getDimensionsString, getElementSize, getIOVar, getName, getNameAndDimensions, getNameAndDimensions, getParentGroup, getParentStructure, getRanges, getRank, getSectionRanges, getShape, getShortName, getSize, getSizeToCache, getSPobject, hasCachedData, invalidateCache, isCaching, isMemberOfStructure, isMetadata, isScalar, isSection, isUnknownLength, isUnlimited, isUnsigned, isVariableLength, makeSection, makeSectionAddParents, makeSectionRanges, makeSectionWithParents, makeSlice, makeSliceRanges, read, read, read, read, readAllStructures, readAllStructuresSpec, readScalarByte, readScalarDouble, readScalarFloat, readScalarInt, readScalarLong, readScalarShort, readScalarString, remove, replaceDimension, setCachedData, setCaching, setDataType, setDimension, setDimensions, setDimensions, setDimensionsAnonymous, setElementSize, setIOVar, setIsCoordinateAxis, setName, setParentGroup, setParentStructure, setSizeToCache, setSPobject, toString, toStringDebug, writeCDL

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ucar.nc2.VariableSimpleIF

findAttributeIgnoreCase, getAttributes, getDataType, getDimensions, getName, getRank, getShape, getShortName

Methods inherited from interface ucar.nc2.VariableIF

findAttribute, findAttributeIgnoreCase, findDimensionIndex, getAttributes, getCoordinateDimension, getDataType, getDimension, getDimensions, getDimensionsAll, getElementSize, getName, getNameAndDimensions, getParentGroup, getParentStructure, getRanges, getRank, getShape, getShortName, getSize, isMemberOfStructure, isMetadata, isScalar, isUnlimited, isUnsigned, isVariableLength, read, read, read, read, readAllStructures, readAllStructuresSpec, readScalarByte, readScalarDouble, readScalarFloat, readScalarInt, readScalarLong, readScalarShort, readScalarString, toStringDebug

Field Detail

POSITIVE_UP

public static final java.lang.String POSITIVE_UP

See Also:

Constant Field Values

POSITIVE_DOWN

public static final java.lang.String POSITIVE_DOWN

See Also:

Constant Field Values

axisType

protected AxisType axisType

positive

protected java.lang.String positive

boundaryRef

protected java.lang.String boundaryRef

isContiguous

protected boolean isContiguous

Constructor Detail

CoordinateAxis

protected CoordinateAxis(Variable vds)

Create a coordinate axis from an existing Variable.

Parameters:

vds - an existing Variable in dataset.

CoordinateAxis

public CoordinateAxis(NetcdfDataset ds,
                      Group group,
                      java.lang.String shortName,
                      DataType dataType,
                      java.lang.String dims,
                      java.lang.String units,
                      java.lang.String desc)

Constructor when theres no underlying variable. You better set the values too!

Parameters:

ds - the containing dataset.

group - the containing group; if null, use rootGroup

shortName - axis name.

dataType - data type

dims - list of dimension names

units - units of coordinates, preferably udunit compatible.

desc - long name.

Method Detail

factory

public static CoordinateAxis factory(NetcdfDataset dataset,
                                     VariableDS vds)

Create a coordinate axis from an existing Variable.

Parameters:

dataset - the containing dataset

vds - an existing Variable in dataset.

Returns:

CoordinateAxis1D, CoordinateAxis2D, or CoordinateAxis.

getAxisType

public AxisType getAxisType()

Get type of axis, or null if none.

setAxisType

public void setAxisType(AxisType axisType)

Set type of axis, or null if none. Default is none.

getUnitsString

public java.lang.String getUnitsString()

Description copied from class: Variable

Get the Unit String for the Variable. Default is to use "units" attribute value

Specified by:

getUnitsString in interface Enhancements

Specified by:

getUnitsString in interface VariableSimpleIF

Overrides:

getUnitsString in class VariableDS

Returns:

unit string, or null if not found.

isNumeric

public boolean isNumeric()

If the CoordAxis is numeric or string valued.

isContiguous

public boolean isContiguous()

If the edges are contiguous or disjoint. Assumed true unless set otherwise.

setContiguous

public void setContiguous(boolean isContiguous)

Set if the edges are contiguous or disjoint.

getPositive

public java.lang.String getPositive()

Get the direction of increasing values, used only for vertical Axes.

Returns:

POSITIVE_UP, POSITIVE_DOWN, or null if unknown.

setPositive

public void setPositive(java.lang.String positive)

Set the direction of increasing values, used only for vertical Axes. Set to POSITIVE_UP, POSITIVE_DOWN, or null if you dont know..

getBoundaryRef

public java.lang.String getBoundaryRef()

Get the name of this coordinate axis' boundary variable, or null if none.

setBoundaryRef

public void setBoundaryRef(java.lang.String boundaryRef)

Set a reference to a boundary variable. Must be name of boundary coordinate variable.

cacheOK

protected boolean cacheOK()

getMinValue

public double getMinValue()

Get the maximum coordinate value

getMaxValue

public double getMaxValue()

Get the minimum coordinate value

getInfo

public java.lang.String getInfo()

formatted string representation

equals

public boolean equals(java.lang.Object oo)

Instances which have same content are equal.

Overrides:

equals in class Variable

hashCode

public int hashCode()

Override Object.hashCode() to implement equals.

Overrides:

hashCode in class Variable

compareTo

public int compareTo(java.lang.Object o)

Use the name to sort on

Specified by:

compareTo in interface java.lang.Comparable

Overrides:

compareTo in class VariableDS

Parameters:

o - the other CoordinateAxis

Returns:

-1,0,1