ucar.nc2.iosp.bufr
Class BufrIosp

java.lang.Object
  ucar.nc2.iosp.bufr.BufrIosp

All Implemented Interfaces:

IOServiceProvider

public class BufrIosp
extends java.lang.Object
implements IOServiceProvider

BufrIosp

Field Summary

static boolean	extendIndex
static boolean	forceNewIndex
protected NetcdfFile	ncfile
protected java.lang.StringBuffer	parseInfo
protected RandomAccessFile	raf
static boolean	useMaximalCoordSys

Constructor Summary

BufrIosp()

Method Summary

protected void	_readData(long DDSoffset, long obsOffset, int bitPos, int bitBuf)
void	close() Close the file.
java.lang.String	getDetailInfo() Show debug / underlying implementation details
protected ucar.bufr.Index	getIndex(java.lang.String location, CancelTask cancelTask) Open the index file.
boolean	isValidFile(RandomAccessFile raf) Check if this is a valid file for this IOServiceProvider.
static void	main(java.lang.String[] args) main.
protected void	open(ucar.bufr.Index index, CancelTask cancelTask)
void	open(RandomAccessFile raf, NetcdfFile ncfile, CancelTask cancelTask) Open existing file, and populate ncfile with it.
Array	readData(Variable v2, java.util.List section) Read data from a top level Variable and return a memory resident Array.
void	readDataCompressed(java.lang.String table, java.util.ArrayList locations, Range range, java.util.HashMap observations, java.util.ArrayList vars, java.util.HashMap iiHash, java.util.HashMap dataHash, StructureMembers members)
Array	readDataVariableRecord(Variable v2, java.util.List section)
void	readDataVariableRecordCompressed(java.lang.String table, java.util.ArrayList locations, Range range, java.util.HashMap observations, Variable v2, IndexIterator ii, Array data)
Array	readNestedData(Variable v2, java.util.List section) Read data from a Variable that is nested in one or more Structures.
static void	setDebugFlags(DebugFlags debugFlag)
static void	setExtendIndex(boolean b)
void	setSpecial(java.lang.Object special) A way to communicate arbitrary information to an iosp.
boolean	sync() Check if file has changed, and reread metadata if needed.
boolean	syncExtend() Extend the file if needed in a way that is compatible with the current metadata.
java.lang.String	toStringDebug(java.lang.Object o) Debug info for this object.
static void	useMaximalCoordSys(boolean b)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ncfile

protected NetcdfFile ncfile

raf

protected RandomAccessFile raf

parseInfo

protected java.lang.StringBuffer parseInfo

forceNewIndex

public static boolean forceNewIndex

useMaximalCoordSys

public static boolean useMaximalCoordSys

extendIndex

public static boolean extendIndex

Constructor Detail

BufrIosp

public BufrIosp()

Method Detail

useMaximalCoordSys

public static void useMaximalCoordSys(boolean b)

setExtendIndex

public static void setExtendIndex(boolean b)

setDebugFlags

public static void setDebugFlags(DebugFlags debugFlag)

isValidFile

public boolean isValidFile(RandomAccessFile raf)

Description copied from interface: IOServiceProvider

Check if this is a valid file for this IOServiceProvider.

Specified by:

isValidFile in interface IOServiceProvider

Parameters:

raf - RandomAccessFile

Returns:

true if valid.

open

protected void open(ucar.bufr.Index index,
                    CancelTask cancelTask)
             throws java.io.IOException

Throws:

java.io.IOException

open

public void open(RandomAccessFile raf,
                 NetcdfFile ncfile,
                 CancelTask cancelTask)
          throws java.io.IOException

Description copied from interface: IOServiceProvider

Open existing file, and populate ncfile with it.

Specified by:

open in interface IOServiceProvider

Parameters:

raf - the file to work on, it has already passed the isValidFile() test.

ncfile - add objects to this NetcdfFile

cancelTask - used to monito user cancellation; may be null.

Throws:

java.io.IOException

getIndex

protected ucar.bufr.Index getIndex(java.lang.String location,
                                   CancelTask cancelTask)
                            throws java.io.IOException

Open the index file. If not exists, create it. When writing use DiskCache, to make sure location is writeable.

Parameters:

location - location of the file. The index file has ".bfx" appended.

cancelTask - user may cancel

Returns:

ucar.bufr.Index

Throws:

java.io.IOException

syncExtend

public boolean syncExtend()

Description copied from interface: IOServiceProvider

Extend the file if needed in a way that is compatible with the current metadata. For example, if the unlimited dimension has grown.

Specified by:

syncExtend in interface IOServiceProvider

Returns:

true if file was exteneed.

sync

public boolean sync()
             throws java.io.IOException

Description copied from interface: IOServiceProvider

Check if file has changed, and reread metadata if needed.

Specified by:

sync in interface IOServiceProvider

Returns:

true if file was changed.

Throws:

java.io.IOException

readData

public Array readData(Variable v2,
                      java.util.List section)
               throws java.io.IOException,
                      InvalidRangeException

Description copied from interface: IOServiceProvider

Read data from a top level Variable and return a memory resident Array. This Array has the same element type as the Variable, and the requested shape.

Specified by:

readData in interface IOServiceProvider

Parameters:

v2 - a top-level Variable

section - List of type Range specifying the section of data to read. There must be a Range for each Dimension in the variable, in order. Note: no nulls.

Returns:

the requested data in a memory-resident Array

Throws:

java.io.IOException

InvalidRangeException

See Also:

Range

readDataCompressed

public void readDataCompressed(java.lang.String table,
                               java.util.ArrayList locations,
                               Range range,
                               java.util.HashMap observations,
                               java.util.ArrayList vars,
                               java.util.HashMap iiHash,
                               java.util.HashMap dataHash,
                               StructureMembers members)
                        throws java.io.IOException,
                               InvalidRangeException

Throws:

java.io.IOException

InvalidRangeException

readDataVariableRecord

public Array readDataVariableRecord(Variable v2,
                                    java.util.List section)
                             throws java.io.IOException,
                                    InvalidRangeException

Throws:

java.io.IOException

InvalidRangeException

readDataVariableRecordCompressed

public void readDataVariableRecordCompressed(java.lang.String table,
                                             java.util.ArrayList locations,
                                             Range range,
                                             java.util.HashMap observations,
                                             Variable v2,
                                             IndexIterator ii,
                                             Array data)
                                      throws java.io.IOException,
                                             InvalidRangeException

Throws:

java.io.IOException

InvalidRangeException

readNestedData

public Array readNestedData(Variable v2,
                            java.util.List section)
                     throws java.io.IOException,
                            InvalidRangeException

Description copied from interface: IOServiceProvider

Read data from a Variable that is nested in one or more Structures. If there are no Structures in the file, this will never be called. Return an Array of the same type as the Variable and the requested shape. The shape must be an accumulation of all the shapes of the Structures containing the variable.

v2.getParent() is called to get the containing Structures.

Specified by:

readNestedData in interface IOServiceProvider

Parameters:

v2 - a nested Variable.

section - List of type Range specifying the section of data to read. There must be a Range for each Dimension in each parent, as well as in the Variable itself. Must be in order from outer to inner. Note: no nulls.

Returns:

the requested data in a memory-resident Array

Throws:

java.io.IOException

InvalidRangeException

_readData

protected void _readData(long DDSoffset,
                         long obsOffset,
                         int bitPos,
                         int bitBuf)
                  throws java.io.IOException

Throws:

java.io.IOException

close

public void close()
           throws java.io.IOException

Description copied from interface: IOServiceProvider

Close the file. It is the IOServiceProvider's job to close the file (even though it didnt open it), and to free any other resources it has used.

Specified by:

close in interface IOServiceProvider

Throws:

java.io.IOException

setSpecial

public void setSpecial(java.lang.Object special)

Description copied from interface: IOServiceProvider

A way to communicate arbitrary information to an iosp. Typically this is set before open() is called.

Specified by:

setSpecial in interface IOServiceProvider

Parameters:

special - opaque special settings.

toStringDebug

public java.lang.String toStringDebug(java.lang.Object o)

Description copied from interface: IOServiceProvider

Debug info for this object.

Specified by:

toStringDebug in interface IOServiceProvider

getDetailInfo

public java.lang.String getDetailInfo()

Description copied from interface: IOServiceProvider

Show debug / underlying implementation details

Specified by:

getDetailInfo in interface IOServiceProvider

main

public static void main(java.lang.String[] args)
                 throws java.lang.Exception,
                        java.io.IOException,
                        java.lang.InstantiationException,
                        java.lang.IllegalAccessException

main.

Throws:

java.lang.Exception

java.io.IOException

java.lang.InstantiationException

java.lang.IllegalAccessException