Re: [thredds] Odd errors after upgrade to 4.6.4

I am converting this to a Github issue:
https://github.com/Unidata/thredds/issues/501
=Dennis Heimbigner
  Unidata

On 3/24/2016 7:34 AM, David Blodgett wrote:
Following up with a bit more info.

This dataset:
http://cida.usgs.gov/thredds/catalog.html?dataset=cida.usgs.gov/wicci/cmip3/20c3m
And this one:
http://cida.usgs.gov/thredds/catalog.html?dataset=cida.usgs.gov/wicci/cmip3/sres_early

Are identical except one is for a period in the future (sres_early) After some 
period of time with no direct use of the dataset, the netCDFSubset page starts 
to come back 500 for the sres_early. For the 20c3m, the netcdf subset page 
comes back 200, but I get stack trace 1, included below.

A related DataBtree error can be reproduced by asking for the coordinate 
variables of this dataset: 
http://cida.usgs.gov/thredds/dodsC/stageiv/stageiv_archive.ncml.ascii?lon[0:1:1120][0:1:880]
 The threddsservlet log stack trace is included as stack trace 2 below.

What’s odd is that the server works as expected for some period of time or volume of usage 
then goes into this state where some aggregations of netcdf4 data produce DataBTree errors and some 
NetCDF Subset pages return 500 with nothing in the logs indicating a failure. In fact, for the 
NetCDF Subset 500 errors, there is no ‘Request Completed’ in the threddsservlet log.

This is only happening with some datasets and it appears that the core datasets we host are 
all functioning as expected. I’d really rather not roll back to an old version if we 
can identify a fix for this. If I need to take the time to provide sample files I can do 
that, but I’d need to know specifically what is needed to look at it more closely.

Thanks!

- Dave

Stack trace 1:

2016-03-24T08:24:00.844 -0500 [   2740359][     366] ERROR - 
ucar.nc2.dt.grid.GridCoordSys - N/A: Error reading time coord= time
java.lang.IllegalStateException: DataBTree doesnt start with TREE
        at ucar.nc2.iosp.hdf5.DataBTree$Node.<init>(DataBTree.java:175) 
~[cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.iosp.hdf5.DataBTree$DataChunkIterator.<init>(DataBTree.java:135) 
~[cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.iosp.hdf5.DataBTree.getDataChunkIteratorFilter(DataBTree.java:61) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.iosp.hdf5.H5tiledLayoutBB.<init>(H5tiledLayoutBB.java:110) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.iosp.hdf5.H5iosp.readData(H5iosp.java:162) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.iosp.hdf5.H5iosp.readData(H5iosp.java:141) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.NetcdfFile.readData(NetcdfFile.java:2009) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.Variable.reallyRead(Variable.java:874) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.Variable._read(Variable.java:845) ~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.Variable.read(Variable.java:723) ~[cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.ncml.Aggregation$DatasetProxyReader.reallyRead(Aggregation.java:843) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.dataset.VariableDS._read(VariableDS.java:507) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.Variable.read(Variable.java:723) ~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.dataset.VariableDS.reallyRead(VariableDS.java:523) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.dataset.VariableDS._read(VariableDS.java:507) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.Variable.read(Variable.java:723) ~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.dataset.VariableDS.reallyRead(VariableDS.java:523) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.dataset.VariableDS._read(VariableDS.java:507) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.Variable.read(Variable.java:723) ~[cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.dataset.CoordinateAxis1DTime.<init>(CoordinateAxis1DTime.java:305) 
~[cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.dataset.CoordinateAxis1DTime.factory(CoordinateAxis1DTime.java:74) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.dt.grid.GridCoordSys.<init>(GridCoordSys.java:409) 
[cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.dt.grid.GridCoordSys.makeGridCoordSys(GridCoordSys.java:308) 
[cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.dt.grid.GridDataset.constructCoordinateSystems(GridDataset.java:170) 
[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.dt.grid.GridDataset.<init>(GridDataset.java:150) 
[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.dt.grid.GridDataset.<init>(GridDataset.java:128) 
[cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.ft.GridDatasetStandardFactory.isMine(GridDatasetStandardFactory.java:55)
 [cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.ft.FeatureDatasetFactoryManager.wrap(FeatureDatasetFactoryManager.java:280)
 [cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.ft.FeatureDatasetFactoryManager.wrapUnknown(FeatureDatasetFactoryManager.java:299)
 [cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.ft.FeatureDatasetFactoryManager.wrap(FeatureDatasetFactoryManager.java:270)
 [cdm-4.6.4.jar:4.6.4]
        at 
thredds.server.ncss.dataservice.FeatureDatasetServiceImpl.findDatasetByPath(FeatureDatasetServiceImpl.java:93)
 [FeatureDatasetServiceImpl.class:?]
        at 
thredds.server.ncss.controller.NcssDatasetInfoController.getDatasetDescription(NcssDatasetInfoController.java:98)
 [NcssDatasetInfoController.class:?]
        at sun.reflect.GeneratedMethodAccessor47.invoke(Unknown Source) ~[?:?]
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
 ~[?:1.8.0_45]
        at java.lang.reflect.Method.invoke(Method.java:497) ~[?:1.8.0_45]
        at 
org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:221)
 [spring-web-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)
 [spring-web-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)
 [spring-webmvc-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandleMethod(RequestMappingHandlerAdapter.java:776)
 [spring-webmvc-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:705)
 [spring-webmvc-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
 [spring-webmvc-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
 [spring-webmvc-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
 [spring-webmvc-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:966)
 [spring-webmvc-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:857)
 [spring-webmvc-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:620) 
[servlet-api.jar:?]
        at 
org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:842)
 [spring-webmvc-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:727) 
[servlet-api.jar:?]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
thredds.servlet.filter.RequestQueryFilter.doFilter(RequestQueryFilter.java:118) 
[RequestQueryFilter.class:?]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) 
[tomcat7-websocket.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
thredds.servlet.filter.RequestCORSFilter.doFilterInternal(RequestCORSFilter.java:49)
 [RequestCORSFilter.class:?]
        at 
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
 [spring-web-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:344)
 [spring-web-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:261)
 [spring-web-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
thredds.servlet.filter.RequestPathFilter.doFilter(RequestPathFilter.java:94) 
[RequestPathFilter.class:?]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
thredds.server.RequestBracketingLogMessageFilter.doFilter(RequestBracketingLogMessageFilter.java:81)
 [RequestBracketingLogMessageFilter.class:?]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
org.apache.logging.log4j.web.Log4jServletFilter.doFilter(Log4jServletFilter.java:71)
 [log4j-web-2.2.jar:2.2]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170) 
[catalina.jar:7.0.53]
        at 
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98) 
[catalina.jar:7.0.53]
        at 
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950) 
[catalina.jar:7.0.53]
        at 
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) 
[catalina.jar:7.0.53]
        at 
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040)
 [tomcat-coyote.jar:7.0.53]
        at 
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607)
 [tomcat-coyote.jar:7.0.53]
        at 
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:313)
 [tomcat-coyote.jar:7.0.53]
        at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) 
[?:1.8.0_45]
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) 
[?:1.8.0_45]
        at java.lang.Thread.run(Thread.java:745) [?:1.8.0_45]

Stack trace 2:

2016-03-24T08:29:51.406 -0500 [   3090921][     383] ERROR - 
thredds.server.opendap.OpendapServlet - path2= 
/stageiv/stageiv_archive.ncml.ascii
java.lang.IllegalStateException: DataBTree doesnt start with TREE
        at ucar.nc2.iosp.hdf5.DataBTree$Node.<init>(DataBTree.java:175) 
~[cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.iosp.hdf5.DataBTree$DataChunkIterator.<init>(DataBTree.java:135) 
~[cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.iosp.hdf5.DataBTree.getDataChunkIteratorFilter(DataBTree.java:61) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.iosp.hdf5.H5tiledLayoutBB.<init>(H5tiledLayoutBB.java:110) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.iosp.hdf5.H5iosp.readData(H5iosp.java:162) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.iosp.hdf5.H5iosp.readData(H5iosp.java:141) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.NetcdfFile.readData(NetcdfFile.java:2009) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.Variable.reallyRead(Variable.java:874) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.Variable._read(Variable.java:845) ~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.Variable.read(Variable.java:723) ~[cdm-4.6.4.jar:4.6.4]
        at 
ucar.nc2.ncml.Aggregation$DatasetProxyReader.reallyRead(Aggregation.java:843) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.dataset.VariableDS._read(VariableDS.java:507) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.Variable.read(Variable.java:723) ~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.dataset.VariableDS.reallyRead(VariableDS.java:523) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.dataset.VariableDS._read(VariableDS.java:507) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.dataset.VariableDS._read(VariableDS.java:531) 
~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.Variable.read(Variable.java:709) ~[cdm-4.6.4.jar:4.6.4]
        at ucar.nc2.Variable.read(Variable.java:683) ~[cdm-4.6.4.jar:4.6.4]
        at thredds.server.opendap.NcSDArray.read(NcSDArray.java:115) 
~[NcSDArray.class:?]
        at opendap.servlet.AsciiWriter.writeAsc(AsciiWriter.java:107) 
~[opendap-4.6.4.jar:4.6.4]
        at opendap.servlet.AsciiWriter.toASCII(AsciiWriter.java:68) 
~[opendap-4.6.4.jar:4.6.4]
        at 
thredds.server.opendap.OpendapServlet.doGetASC(OpendapServlet.java:315) 
~[OpendapServlet.class:?]
        at thredds.server.opendap.OpendapServlet.doGet(OpendapServlet.java:220) 
[OpendapServlet.class:?]
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:620) 
[servlet-api.jar:?]
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:727) 
[servlet-api.jar:?]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at thredds.servlet.filter.CookieFilter.doFilter(CookieFilter.java:55) 
[CookieFilter.class:?]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
thredds.servlet.filter.RequestQueryFilter.doFilter(RequestQueryFilter.java:118) 
[RequestQueryFilter.class:?]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) 
[tomcat7-websocket.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
thredds.servlet.filter.RequestCORSFilter.doFilterInternal(RequestCORSFilter.java:49)
 [RequestCORSFilter.class:?]
        at 
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
 [spring-web-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:344)
 [spring-web-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:261)
 [spring-web-4.1.6.RELEASE.jar:4.1.6.RELEASE]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
thredds.servlet.filter.RequestPathFilter.doFilter(RequestPathFilter.java:94) 
[RequestPathFilter.class:?]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
thredds.server.RequestBracketingLogMessageFilter.doFilter(RequestBracketingLogMessageFilter.java:81)
 [RequestBracketingLogMessageFilter.class:?]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
org.apache.logging.log4j.web.Log4jServletFilter.doFilter(Log4jServletFilter.java:71)
 [log4j-web-2.2.jar:2.2]
        at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170) 
[catalina.jar:7.0.53]
        at 
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98) 
[catalina.jar:7.0.53]
        at 
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950) 
[catalina.jar:7.0.53]
        at 
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
 [catalina.jar:7.0.53]
        at 
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) 
[catalina.jar:7.0.53]
        at 
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040)
 [tomcat-coyote.jar:7.0.53]
        at 
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607)
 [tomcat-coyote.jar:7.0.53]
        at 
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:313)
 [tomcat-coyote.jar:7.0.53]
        at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) 
[?:1.8.0_45]
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) 
[?:1.8.0_45]
        at java.lang.Thread.run(Thread.java:745) [?:1.8.0_45]
2016-03-24T08:29:51.427 -0500 [   3090942][     383] INFO  - threddsServlet - 
Request Completed - 500 - -1 - 23

On Mar 23, 2016, at 8:13 AM, DAVID L BLODGETT <dblodgett@xxxxxxxx> wrote:

THREDDS Community,

We recently upgraded to THREDDS 4.6.4 from 4.5.5. Everything seemed to go smoothly, 
but we started getting 'DataBTree doesnt start with TREE’ and other DataBTree 
errors.

These seem to be isolated to aggregations of NetCDF4 files and the issue is 
fixed by restarting the server.

I haven’t found anything related to this error elsewhere, maybe someone on the 
list can shed some light on the situation?

Thanks.

- Dave
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