Re: [thredds] gcPass1 with regexp

  • To: Dan Swank - NOAA Affiliate <dan.swank@xxxxxxxx>
  • Subject: Re: [thredds] gcPass1 with regexp
  • From: Christian Ward-Garrison <cwardgar@xxxxxxxx>
  • Date: Wed, 11 Nov 2015 15:45:26 -0700
Oops, that link should be:
ftp://ftp.unidata.ucar.edu/pub/thredds/4.6/current/tdm-4.6.jar

On Wed, Nov 11, 2015 at 3:44 PM, Christian Ward-Garrison <cwardgar@xxxxxxxx>
wrote:

> Hi Dan,
>
> I cannot recreate this issue in the latest release of tdm (v4.6.3). That's
> really weird because the hash you gave for tdm-4.6.jar is the same one I
> have (c97a881c1a7960df2c366d04e9ea5f1b), and yet the line numbers in the
> stack trace don't make sense (many of them correspond to lines that aren't
> even executable).
>
> This may be a dumb question, but are you absolutely sure that you're using
> the latest version [1]? As a sanity check, it might help to download a
> fresh copy and try again.
>
> Cheers,
> Christian
>
> [1] ftp://ftp.unidata.ucar.edu/pub/thredds/4.6/current/thredds.war
>
> On Wed, Nov 4, 2015 at 8:03 AM, Dan Swank - NOAA Affiliate <
> dan.swank@xxxxxxxx> wrote:
>
>> Right, I thought that would do it, but now:
>>
>> java -Xmx4g -classpath tdm-4.6.jar thredds.tdm.GCpass1 -isGrib2  -regexp
>> "\d{6}/\d{8}/YTU..._KWBN_\d*$" -rootDir "/global/dataset/model/ndfd/"
>> -useCacheDir "/raid/tomcat/tdm45/cache-dev/GribIndex"  > gcpass1.outfile
>>
>>
>> Exception in thread "main" java.lang.NullPointerException
>>   at
>> thredds.inventory.CollectionSpecParser.<init>(CollectionSpecParser.java:81)
>>   at thredds.tdm.GCpass1.scanAndReport(GCpass1.java:218)
>>   at thredds.tdm.GCpass1.main(GCpass1.java:75)
>>
>> Not sure if this is more with the argument parser
>> or a problem diving into the actual process.
>>
>>
>> On Tue, Nov 3, 2015 at 5:00 PM, Christian Ward-Garrison <
>> cwardgar@xxxxxxxx> wrote:
>>
>>> Hi Dan,
>>>
>>> Have you tried "-regexp" instead of "-regExp"? The CLI parser is really
>>> picky about case.
>>>
>>> Cheers,
>>> Christian
>>>
>>> On Tue, Nov 3, 2015 at 11:20 AM, Dan Swank - NOAA Affiliate <
>>> dan.swank@xxxxxxxx> wrote:
>>>
>>>> I am attempting to use latest
>>>> md5(c97a881c1a7960df2c366d04e9ea5f1b)  tdm-4.6.jar
>>>>
>>>> According to :
>>>>
>>>> https://www.unidata.ucar.edu/software/thredds/current/tds/reference/collections/TDM.html
>>>> (gcpass section)  The -regExp & -rootDir options should be supported,
>>>> but this particular
>>>> .jar seems to only know the older spec method, which I cannot use here.
>>>>
>>>> I attempt:
>>>> $ java -classpath /home/tomcat/dans-tdm-content/content/tdm/tdm-4.6.jar
>>>> thredds.tdm.GCpass1 -regExp "\d{6}/\d{8}/YTU..._KWBN_\d*$" -rootDir
>>>> '/global/dataset/model/ndfd/'  -useCacheDir
>>>> '/raid/tomcat/tdm45/cache-dev/GribIndex' -isGrib2
>>>>
>>>> I get:
>>>> Exception in thread "main" com.beust.jcommander.ParameterException:
>>>> Unknown option: -regExp
>>>>         at
>>>> com.beust.jcommander.JCommander.parseValues(JCommander.java:738)
>>>>         at com.beust.jcommander.JCommander.parse(JCommander.java:281)
>>>>         at com.beust.jcommander.JCommander.parse(JCommander.java:264)
>>>>         at com.beust.jcommander.JCommander.<init>(JCommander.java:209)
>>>>         at thredds.tdm.GCpass1$CommandLine.<init>(GCpass1.java:73)
>>>>         at thredds.tdm.GCpass1.main(GCpass1.java:87)
>>>>
>>>>
>>>> What could be going on?   Are my arguments out of order or the
>>>> documentation not correct
>>>> for this (latest) version of TDM jar?
>>>> --
>>>> Dan Swank
>>>> NOMADS System Support, STG Inc. - Federal Government Contractor
>>>> NOAA's National Centers for Environmental Information (NCEI)
>>>> Data Stewardship Devision (DSD)
>>>> 151 Patton Ave
>>>> Asheville, NC 28801
>>>> dan.swank@xxxxxxxx
>>>> Phone: 828-271-4007
>>>> Customer Support:  828-271-4800 or http://www.ncdc.noaa.gov/contact
>>>>
>>>> The newly formed NCEI merges the National Climatic Data Center (NCDC),
>>>> the National Geophysical Data Center (NGDC), and the National Oceanographic
>>>> Data Center (NODC).
>>>>
>>>> Facebook: http://www.facebook.com/NOAANationalClimaticDataCenter
>>>> Twitter: @NOAANCDC @NOAAOceanData
>>>>
>>>> ======================= Disclaimer ===========
>>>> I am not a Federal Employee.
>>>> Any opinions expressed in this message are mine personally and
>>>> do not represent official positions from STG Inc, ERT, NCEI, or NOAA
>>>> ============================================
>>>>
>>>> _______________________________________________
>>>> thredds mailing list
>>>> thredds@xxxxxxxxxxxxxxxx
>>>> For list information or to unsubscribe,  visit:
>>>> http://www.unidata.ucar.edu/mailing_lists/
>>>>
>>>
>>>
>>
>>
>> --
>>
>> Dan Swank
>> NOMADS System Support, STG Inc. - Federal Government Contractor
>> NOAA's National Centers for Environmental Information (NCEI)
>> Data Stewardship Devision (DSD)
>> 151 Patton Ave
>> Asheville, NC 28801
>> dan.swank@xxxxxxxx
>> Phone: 828-271-4007
>> Customer Support:  828-271-4800 or http://www.ncdc.noaa.gov/contact
>>
>> The newly formed NCEI merges the National Climatic Data Center (NCDC),
>> the National Geophysical Data Center (NGDC), and the National Oceanographic
>> Data Center (NODC).
>>
>> Facebook: http://www.facebook.com/NOAANationalClimaticDataCenter
>> Twitter: @NOAANCDC @NOAAOceanData
>>
>> ======================= Disclaimer ===========
>> I am not a Federal Employee.
>> Any opinions expressed in this message are mine personally and
>> do not represent official positions from STG Inc, ERT, NCEI, or NOAA
>> ============================================
>>
>
>
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