Hi Thomas: Have you published a description of your version of the DAPPER convention? Do you have any URLs that could be used to test server/client compatibility? John On 10/14/2010 11:20 AM, Thomas.Loubrieu@xxxxxxxxxx wrote:
Dear all, I just would like to tell that we are developping an opendap server at Ifremer which is dedicated to in-situ datasets (points, profiles, timeseries and trajectories). It is now called Oceanotron and it is the update of server we previously called Dap4cor. It is supposed to be fully compliant with Dapper server (but reads others types of file format) and relies on the relational opendap constraints to filter the dataset. Pydap is our favorite API for testing the server. To sum up, the purpose of my email is to tell we like very much relational constraints in OPeNDAP. Best regards, Thomas John Caron <caron@xxxxxxxxxxxxxxxx> a écrit :On 10/13/2010 5:00 PM, Bob Simons wrote:John, I read about the new Station Data Subset Service (I'll call it SDSS in this email) http://www.unidata.ucar.edu/projects/THREDDS/tech/interfaceSpec/StationDataSubsetService.html
(version 0.2), which lists you as the contact. I understand that the UAF group is considering using SDSS to deal with station data.
I noticed that SDSS queries are very similar to OPeNDAP constraint expression queries ( http://www.opendap.org/user/guide-html/guide_33.html ). Yet, SDSS seems limited to one type of dataset (stations with time, latitude, longitude, ... data, because it uses specific variable names, e.g., stn, north, south, west, east, time for the constraints) while OPeNDAP constraint expressions can be used with a much broader range of datasets, notably, any dataset that can be represented as a database-like table, because it isn't tied to any specific variable names. And OPeNDAP's bigger set of operators (=, <, <=, >, >=, !=, =~) can be applied to any variable, not just longitude/latitude/depth/time/stn. The sample queries in the SDSS documentation can easily be converted to OPeNDAP constraint expression queries, for example: SDSS: ?north=17.3&south=12.088&west=140.2&east=160.0 OPeNDAP: ?latitude<=17.3&latitude>=12.088&longitude>=140.2&longitude<=160.0
OPeNDAP: ?stn="KDEN" SDSS: ?stn=KDEN&stn=KPAL&stn=SDOL OPeNDAP: ?stn=~"KDEN|KPAL|SDOL" (=~ lets you specify a regular expression to be matched) SDSS: ?time_start=2007-03-29T12:00:00Z&time_end=2007-03-29T13:00:00Z OPeNDAP: ?time>="2007-03-29T12:00:00Z"&time<="2007-03-29T13:00:00Z" SDSS' accept=mime_type could be mimicked by having the OPeNDAP server support file extensions in addition to .dods and .asc (or by some other means if necessary). And mime types have a problem if two file types share the same mime type. OPeNDAP's sequence data type is well-suited to this type of data query and to the API described at http://www.unidata.ucar.edu/software/netcdf-java/reference/FeatureDatasets/PointFeatures.html . I have worked quite a lot with OPeNDAP constraint expressions and I have found them to be * Very flexible (well-suited to a wide range of datasets and queries), * Very easy for non-programmers to read, write, and understand, * Easy to convert into queries for other types of data servers (e.g., SQL, SOS, OBIS), * Easy for data servers to handle and optimize. They are sort of like a nice subset of SQL with a really simple syntax. All of this discussion leads up to this: I'm very curious: why did you decide to define a new protocol instead of using the existing standard OPeNDAP constraint expression protocol? And/or, would you consider switching to the OPeNDAP constraint expression protocol? Instead of creating a new service with one server implementation (THREDDS) and one client implementation (netcdf-java), switching to OPeNDAP constraint expressions would hook your service into the realm of other servers and clients that already support OPeNDAP constraint expressions. And supporting OPeNDAP constraint expressions in THREDDS seems like a logical extension for a data server which already supports OPeNDAP grid/hyperslab queries. I am very curious to hear your thoughts on this. Thanks for considering this. Sincerely, Bob Simons IT Specialist Environmental Research Division NOAA Southwest Fisheries Science Center 1352 Lighthouse Ave Pacific Grove, CA 93950-2079 Phone: (831)658-3205 Fax: (831)648-8440 Email: bob.simons@xxxxxxxx The contents of this message are mine personally and do not necessarily reflect any position of the Government or the National Oceanic and Atmospheric Administration. <>< <>< <>< <>< <>< <>< <>< <>< <><Hi Bob: The original motivation of the Netcdf Subset Service was to provide subsets of gridded data in netCDF-CF format. The subsetting request is specified in coordinate (lat/lon/alt/time) space, so that it could be done from a web form, or from a simple wget script. The service has continued to evolve, and its time to evaluate where it is and where it should go, so your question comparing it to OPeNDAP is timely. Background The NetCDF Subset Services (NCSS) are a family of experimental web protocols for making queries in coordinate space (rather than index space), against CDM "Feature Type" datasets; see: http://www.unidata.ucar.edu/projects/THREDDS/tech/interfaceSpec/NetcdfSubsetService.html
Functionally, they are intended to be a simplified version of the OGC protocols, and are most directly an alternative to OGC web services. In order to support queries in coordinate space the data model has to have a general notion of coordinates, and in particular, the use case I want to cover is to support space/time subsetting. The data models of OPeNDAP, netCDF and HDF5 have only partially handled coordinate systems; see:
This is one reason why the OGC protocols have the mind share that they do (plus lots of $$$ and commercial effort, etc). This is also the reason that the CDM is an extension of OPeNDAP, netCDF and HDF5, rather than just their union, see:
http://www.unidata.ucar.edu/software/netcdf-java/CDM/index.html As I mentioned, NCSS are intended to return results in commonly used formats (netCDF, CSV, XML, etc) that can be used in other applications directly, rather than having to have a smart client that can convert binary dods objects. OPeNDAP To answer your specific questions:Yet, SDSS seems limited to one type of dataset (stations with time, latitude, longitude, ... data, because it uses specific variable names, e.g., stn, north, south, west, east, time for the constraints) while OPeNDAP constraint expressions can be used with a much broader range of datasets, notably, any dataset that can be represented as a database-like table, because it isn't tied to any specific variable names. And OPeNDAP's bigger set of operators (=, <, <=, >, >=, !=, =~) can be applied to any variable, not just longitude/latitude/depth/time/stn."stn, north, south, west, east, time" are not variable names, they are names for those semantic concepts, and dont depend on those names being present in the dataset. In that sense they are more general than an OPeNDAP request, where you have to know what the actual names of the variables are. OPeNDAP constraint expressions are very powerful but they have two major problems: 1) they operate on the syntactic level, so, for example, they dont know that lon == longitude, and so cant deal with the longitude seam at +/- 180 (or wherever it is). Another example: if your dataset does not include lat/lon variables, but instead is on a projection, your client has to know how to do the projective geometry math. 2) its hard to efficiently implement the full relational constraint expressions unless you are using an RDBMS. For that reason, you rarely see it implemented in OPeNDAP servers. The NCSS only implements space and time and variable subsetting. This is hard enough to do in a general way, but not as hard as supporting relational constraints on all fields. (OTOH, the relational queries are very nice to use, its just the server implementation thats hard). I have made various suggestions to James over the years on what extensions to OPeNDAP could be used for this use case, but there's no point in Unidata creating non-standard OPeNDAP implementations, since the whole point of OPeNDAP is interoperability between clients and servers. If a standard OPeNDAP way to do coordinate space subsetting emerged, we would be willing to implement it. The "DAPPER protocol" for example seems to be the best fit that Ive seen for the "Station Data Subset Service" use case; essentially DAPPER is a small set of conventions on top of OPeNDAP. These need to be clarified and extended a bit IMO to be generally useful, but are a good start. (BTW, Are you using it?) In the meanwhile, its much faster for us to roll our own, since we own both the server and the client stack, so we can experiment with what works without worrying about breaking OPeNDAP or OGC standards. Most of the work is in the server implementation, so if there was a different but functionally equivalent query protocol, we could easily switch to it. So Im pretty confident that the software we have been implementing can be used, no matter what protocol clients eventually want us to support. I am aware of the dangers of proprietary protocols, but also the frustration of complex standards and ones that don't move for 10 years. Smart clients like the ones you have been writing can do a lot on top of OPeNDAP, but dumb(er) clients cant. We need to push as much of those smarts into the server as possible, and in order to do that, we need to operate on "higher level semantic" objects than indexed arrays. In the CDM, these objects are intended to be the "Feature Types". The "Grid" Feature Type allows the TDS to support the OGC WCS and WMS protocols, which are becoming more important to getting our data out to a wider community. Those have the problem of being overly complex. The NCSS protocols are looking for the sweet spot of functionality and simplicity.would you consider switching to the OPeNDAP constraint expression protocol?Id be willing to add something like DAPPER as another way that the Station Data Subset Service can deliver data, if there was an important class of clients that needed it and could use it. OTOH, if your software is using the CDM stack, do you care how the objects are delivered to it?switching to OPeNDAP constraint expressions would hook your service into the realm of other servers and clients that already support OPeNDAP constraint expressions.Id be interested in knowing which clients can handle relational constraint expressions? The NetCDF clients cannot, because it falls outside of the data model and API. I know you guys do a lot with relational databases, so its not surprising if your software does. Ive been working almost exclusively on top of collections of files (netcdf, hdf, grib, bufr, etc). I have been on the lookout for new solutions, but for now it seems that people need services that run on top of those file collections. Comments, please Im looking forward to an extended discussion of these issues and where remote access protocols should evolve. Anyone who would like to comment, please feel free. Note that Ive cross posted to 2 groups, beware of cross posting if you're not on both. (now that i think of it, im not sure that im on both). John Caron _______________________________________________ thredds mailing list thredds@xxxxxxxxxxxxxxxx For list information or to unsubscribe, visit: http://www.unidata.ucar.edu/mailing_lists/