[netcdf-hdf] build problem with netcdf-4.0-snapshot2007082102 + hdf5-1.8.0-beta3

Hi,

I've been trying to build netcdf-4.0 + hdf5-1.8.0 with parallel IO support.

Configure was fine but I encountered the compilation issue related to MPI.

Making all in libsrc4
make[2]: Entering directory `/home/ryuta/Development/src/netcdf-4.0-snapshot2007082102/libsrc4'
depbase=`echo nc4attr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I../libsrc4 -I../libsrc -I/home/ryuta/Development/include -I/home/ryuta/Development/include -g -O2 -MT nc4attr.lo -MD -MP -MF "$depbase.Tpo" -c -o nc4attr.lo nc4attr.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi libtool: compile: cc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I../libsrc4 -I../libsrc -I/home/ryuta/Development/include -I/home/ryuta/Development/include -g -O2 -MT nc4attr.lo -MD -MP -MF .deps/nc4attr.Tpo -c nc4attr.c -fPIC -DPIC -o .libs/nc4attr.o
In file included from /home/ryuta/Development/include/H5public.h:57,
                from /home/ryuta/Development/include/hdf5.h:24,
                from ./nc4internal.h:17,
                from nc4attr.c:17:
/usr/local/include/mpi.h:172: error: expected identifier or '(' before 'int'
/usr/local/include/mpi.h:177: error: expected identifier or '(' before 'int'
make[2]: *** [nc4attr.lo] Error 1
make[2]: Leaving directory `/home/ryuta/Development/src/netcdf-4.0-snapshot2007082102/libsrc4'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/ryuta/Development/src/netcdf-4.0-snapshot2007082102'
make: *** [all] Error 2

The compilation failed because in libsrc4/netcdf.h,

...
/* If these aren't defined, then define them as ints, because we must
* be building without parallel. */
#ifndef MPI_Comm
#define MPI_Comm int
#endif
#ifndef MPI_Info
#define MPI_Info int
#endif
...

overwrite these MPI typedef. I use Open-MPI but I anticipate the same will occur in MPICH2.

FYI, hdf5-1.8.0-beta3 is configure as

./configure -C --prefix=/home/ryuta/Development --enable-shared --enable-parallel --with-szlib=/home/ryuta/Development --with-pthread

Any help will be greatly appreciated. Thank you for your time.

Ryuta Suzuki
Department of Aerospace Engineering and Mechanics
University of Minnesota
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by netCDF configure 4.0-snapshot2007082102, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  $ ./configure -C --prefix=/home/ryuta/Development --enable-shared 
--enable-netcdf-4 --enable-cxx-4 --enable-parallel-tests 
--enable-extra-example-tests --disable-f77 --disable-f90 
--with-hdf5=/home/ryuta/Development

## --------- ##
## Platform. ##
## --------- ##

hostname = oroppas
uname -m = i686
uname -r = 2.6.22-ARCH
uname -s = Linux
uname -v = #1 SMP PREEMPT Tue Aug 21 12:21:56 CEST 2007

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = i686
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /home/ryuta/Development/bin
PATH: /home/ryuta/Development/bin
PATH: /bin
PATH: /usr/bin
PATH: /sbin
PATH: /usr/sbin
PATH: /usr/local/bin
PATH: /opt/java/bin
PATH: /opt/java/jre/bin
PATH: /opt/mozilla/bin
PATH: /opt/qt4/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1994: creating cache config.cache
configure:2085: netCDF 4.0-snapshot2007082102
configure:2126: checking build system type
configure:2144: result: i686-pc-linux-gnu
configure:2166: checking host system type
configure:2181: result: i686-pc-linux-gnu
configure:2226: checking for a BSD-compatible install
configure:2282: result: /bin/install -c
configure:2293: checking whether build environment is sane
configure:2336: result: yes
configure:2401: checking for gawk
configure:2417: found /bin/gawk
configure:2428: result: gawk
configure:2439: checking whether make sets $(MAKE)
configure:2460: result: yes
configure:2648: checking user options
configure:2692: checking whether CXX is set to ''
configure:2696: result: no
configure:2700: checking whether FC is set to ''
configure:2704: result: no
configure:2708: checking whether F90 is set to ''
configure:2712: result: no
configure:2716: checking whether netCDF-4 is to be built
configure:2724: result: yes
configure:2746: checking whether netCDF-4 extra tests should be run
configure:2754: result: no
configure:2765: checking whether new netCDF-4 C++ API is to be built
configure:2773: result: yes
configure:2787: checking whether documentation is to be installed
configure:2795: result: no
configure:2809: checking whether Fortran compiler(s) should be tested during 
configure
configure:2817: result: yes
configure:2821: checking whether netCDF-4 varid/dimid created order hack should 
be used
configure:2829: result: no
configure:2840: checking whether HDF5 should do data conversions
configure:2848: result: no
configure:2859: checking whether Fortran compiler(s) should be tested during 
configure
configure:2867: result: yes
configure:2872: checking whether configure should try to set compiler flags
configure:2880: result: yes
configure:2884: checking whether FFIO will be used
configure:2892: result: no
configure:2907: checking whether to skip C++, F77, or F90 APIs if compiler is 
broken
configure:2915: result: yes
configure:2919: checking whether only the C library is desired
configure:2927: result: no
configure:2946: checking whether examples should be built
configure:2954: result: yes
configure:2969: checking whether F77 API is desired
configure:2978: result: no
configure:2983: checking whether F90 API is desired
configure:2993: result: no
configure:2997: checking whether fortran type sizes should be checked
configure:3005: result: yes
configure:3011: checking whether C API is desired
configure:3019: result: yes
configure:3026: checking where to get netCDF C-only library for separate 
fortran libraries
configure:3044: result: 
configure:3059: checking whether CXX API is desired
configure:3068: result: yes
configure:3079: checking whether v2 netCDF API should be built
configure:3087: result: yes
configure:3108: checking whether the ncgen/ncdump should be built
configure:3117: result: yes
configure:3131: checking whether large file (> 2GB) tests should be run
configure:3139: result: no
configure:3153: checking whether benchmaks should be run
configure:3161: result: no
configure:3175: checking whether extra example tests should be run
configure:3183: result: yes
configure:3197: checking whether extreme numbers should be used in tests
configure:3212: result: yes
configure:3224: checking whether parallel IO tests should be run
configure:3232: result: yes
configure:3238: checking where to put large temp files if large file tests are 
run
configure:3247: result: .
configure:3258: checking whether a win32 DLL is desired
configure:3266: result: no
configure:3292: checking whether separate fortran libs are desired
configure:3301: result: yes
configure:3360: checking whether a location for the HDF5 library was specified
configure:3369: result: /home/ryuta/Development
configure:3385: checking whether a location for the ZLIB library was specified
configure:3393: result: 
configure:3409: checking whether a location for the SZLIB library was specified
configure:3417: result: 
configure:3433: checking whether netCDF-4 logging is enabled
configure:3441: result: no
configure:3470: finding C compiler
configure:3527: checking for xlc
configure:3557: result: no
configure:3527: checking for cc
configure:3543: found /usr/bin/cc
configure:3554: result: cc
configure:3590: checking for C compiler version
configure:3597: cc --version >&5
cc (GCC) 4.2.1
Copyright (C) 2007 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3600: $? = 0
configure:3607: cc -v >&5
Using built-in specs.
Target: i686-pc-linux-gnu
Configured with: ../configure --prefix=/usr --enable-shared 
--enable-languages=c,c++,objc --enable-threads=posix --enable-__cxa_atexit 
--disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu 
--disable-libstdcxx-pch --with-tune=generic
Thread model: posix
gcc version 4.2.1
configure:3610: $? = 0
configure:3617: cc -V >&5
cc: '-V' option must have argument
configure:3620: $? = 1
configure:3643: checking for C compiler default output file name
configure:3670: cc    conftest.c  >&5
configure:3673: $? = 0
configure:3711: result: a.out
configure:3728: checking whether the C compiler works
configure:3738: ./a.out
configure:3741: $? = 0
configure:3758: result: yes
configure:3765: checking whether we are cross compiling
configure:3767: result: no
configure:3770: checking for suffix of executables
configure:3777: cc -o conftest    conftest.c  >&5
configure:3780: $? = 0
configure:3804: result: 
configure:3810: checking for suffix of object files
configure:3836: cc -c   conftest.c >&5
configure:3839: $? = 0
configure:3862: result: o
configure:3866: checking whether we are using the GNU C compiler
configure:3895: cc -c   conftest.c >&5
configure:3901: $? = 0
configure:3918: result: yes
configure:3923: checking whether cc accepts -g
configure:3953: cc -c -g  conftest.c >&5
configure:3959: $? = 0
configure:4058: result: yes
configure:4075: checking for cc option to accept ISO C89
configure:4149: cc  -c -g -O2  conftest.c >&5
configure:4155: $? = 0
configure:4178: result: none needed
configure:4207: checking for style of include used by make
configure:4235: result: GNU
configure:4263: checking dependency style of cc
configure:4353: result: gcc3
configure:4374: checking whether cc understands -c and -o together
configure:4406: cc -c conftest.c -o conftest2.o >&5
configure:4409: $? = 0
configure:4415: cc -c conftest.c -o conftest2.o >&5
configure:4418: $? = 0
configure:4470: result: yes
configure:4496: checking for an ANSI C-conforming const
configure:4571: cc -c -g -O2  conftest.c >&5
configure:4577: $? = 0
configure:4592: result: yes
configure:4623: finding Fortran compiler (will not be used if Fortran API is 
not desired)
configure:4956: checking for xlf90
configure:4986: result: no
configure:4956: checking for fort
configure:4986: result: no
configure:4956: checking for xlf95
configure:4986: result: no
configure:4956: checking for ifort
configure:4986: result: no
configure:4956: checking for ifc
configure:4986: result: no
configure:4956: checking for efc
configure:4986: result: no
configure:4956: checking for pgf95
configure:4986: result: no
configure:4956: checking for lf95
configure:4986: result: no
configure:4956: checking for gfortran
configure:4972: found /usr/bin/gfortran
configure:4983: result: gfortran
configure:5013: checking for Fortran compiler version
configure:5020: gfortran --version >&5
GNU Fortran (GCC) 4.2.1
Copyright (C) 2007 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:5023: $? = 0
configure:5030: gfortran -v >&5
Using built-in specs.
Target: i686-pc-linux-gnu
Configured with: ../configure --prefix=/usr --enable-shared 
--enable-languages=fortran --enable-threads=posix --enable-__cxa_atexit 
--disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu 
--with-tune=generic
Thread model: posix
gcc version 4.2.1
configure:5033: $? = 0
configure:5040: gfortran -V >&5
gfortran: '-V' option must have argument
configure:5043: $? = 1
configure:5051: checking whether we are using the GNU Fortran compiler
configure:5070: gfortran -c   conftest.F >&5
configure:5076: $? = 0
configure:5093: result: yes
configure:5099: checking whether gfortran accepts -g
configure:5116: gfortran -c -g  conftest.f >&5
configure:5122: $? = 0
configure:5138: result: yes
configure:5231: checking for xlf
configure:5261: result: no
configure:5231: checking for fort
configure:5261: result: no
configure:5231: checking for xlf95
configure:5261: result: no
configure:5231: checking for ifort
configure:5261: result: no
configure:5231: checking for ifc
configure:5261: result: no
configure:5231: checking for efc
configure:5261: result: no
configure:5231: checking for pgf77
configure:5261: result: no
configure:5231: checking for lf95
configure:5261: result: no
configure:5231: checking for gfortran
configure:5247: found /usr/bin/gfortran
configure:5258: result: gfortran
configure:5288: checking for Fortran 77 compiler version
configure:5295: gfortran --version >&5
GNU Fortran (GCC) 4.2.1
Copyright (C) 2007 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:5298: $? = 0
configure:5305: gfortran -v >&5
Using built-in specs.
Target: i686-pc-linux-gnu
Configured with: ../configure --prefix=/usr --enable-shared 
--enable-languages=fortran --enable-threads=posix --enable-__cxa_atexit 
--disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu 
--with-tune=generic
Thread model: posix
gcc version 4.2.1
configure:5308: $? = 0
configure:5315: gfortran -V >&5
gfortran: '-V' option must have argument
configure:5318: $? = 1
configure:5326: checking whether we are using the GNU Fortran 77 compiler
configure:5345: gfortran -c  conftest.F >&5
configure:5351: $? = 0
configure:5368: result: yes
configure:5374: checking whether gfortran accepts -g
configure:5391: gfortran -c -g conftest.f >&5
configure:5397: $? = 0
configure:5413: result: yes
configure:5706: finding C++ compiler (will not be used if C++ API is not 
desired)
configure:5773: checking for cl
configure:5803: result: no
configure:5773: checking for KCC
configure:5803: result: no
configure:5773: checking for CC
configure:5803: result: no
configure:5773: checking for cxx
configure:5803: result: no
configure:5773: checking for cc++
configure:5803: result: no
configure:5773: checking for xlC
configure:5803: result: no
configure:5773: checking for aCC
configure:5803: result: no
configure:5773: checking for c++
configure:5789: found /usr/bin/c++
configure:5800: result: c++
configure:5831: checking for C++ compiler version
configure:5838: c++ --version >&5
c++ (GCC) 4.2.1
Copyright (C) 2007 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:5841: $? = 0
configure:5848: c++ -v >&5
Using built-in specs.
Target: i686-pc-linux-gnu
Configured with: ../configure --prefix=/usr --enable-shared 
--enable-languages=c,c++,objc --enable-threads=posix --enable-__cxa_atexit 
--disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu 
--disable-libstdcxx-pch --with-tune=generic
Thread model: posix
gcc version 4.2.1
configure:5851: $? = 0
configure:5858: c++ -V >&5
c++: '-V' option must have argument
configure:5861: $? = 1
configure:5864: checking whether we are using the GNU C++ compiler
configure:5893: c++ -c   conftest.cpp >&5
configure:5899: $? = 0
configure:5916: result: yes
configure:5921: checking whether c++ accepts -g
configure:5951: c++ -c -g  conftest.cpp >&5
configure:5957: $? = 0
configure:6056: result: yes
configure:6081: checking dependency style of c++
configure:6171: result: gcc3
configure:6677: checking for a sed that does not truncate output
configure:6756: result: /bin/sed
configure:6774: checking for grep that handles long lines and -e
configure:6848: result: /bin/grep
configure:6853: checking for egrep
configure:6931: result: /bin/grep -E
configure:6936: checking for fgrep
configure:7014: result: /bin/grep -F
configure:7049: checking for ld used by cc
configure:7116: result: /usr/bin/ld
configure:7125: checking if the linker (/usr/bin/ld) is GNU ld
configure:7140: result: yes
configure:7153: checking for BSD- or MS-compatible name lister (nm)
configure:7202: result: /usr/bin/nm -B
configure:7324: checking the name lister (/usr/bin/nm -B) interface
configure:7331: cc -c -g -O2  conftest.c >&5
configure:7334: /usr/bin/nm -B "conftest.o"
configure:7337: output
00000000 B some_variable
configure:7344: result: BSD nm
configure:7347: checking whether ln -s works
configure:7351: result: yes
configure:7359: checking the maximum length of command line arguments
configure:7473: result: 32768
configure:7491: checking whether the shell understands some XSI constructs
configure:7499: result: yes
configure:7503: checking whether the shell understands "+="
configure:7509: result: yes
configure:7544: checking for /usr/bin/ld option to reload object files
configure:7551: result: -r
configure:7578: checking how to recognise dependent libraries
configure:7762: result: pass_all
configure:7822: checking for ar
configure:7838: found /usr/bin/ar
configure:7849: result: ar
configure:7931: checking for strip
configure:7947: found /usr/bin/strip
configure:7958: result: strip
configure:8034: checking for ranlib
configure:8050: found /usr/bin/ranlib
configure:8061: result: ranlib
configure:8155: checking command to parse /usr/bin/nm -B output from cc object
configure:8271: cc -c -g -O2  conftest.c >&5
configure:8274: $? = 0
configure:8278: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[  
]\([ABCDGIRSTW][ABCDGIRSTW]*\)[         ][      
]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm
configure:8281: $? = 0
configure:8335: cc -o conftest -g -O2   conftest.c conftstm.o >&5
configure:8338: $? = 0
configure:8376: result: ok
configure:8608: checking how to run the C preprocessor
configure:8648: cc -E  conftest.c
configure:8654: $? = 0
configure:8685: cc -E  conftest.c
conftest.c:13:28: error: ac_nonexistent.h: No such file or directory
configure:8691: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0-snapshot2007082102"
| #define PACKAGE_STRING "netCDF 4.0-snapshot2007082102"
| #define PACKAGE_BUGREPORT "support@xxxxxxxxxxxxxxxx"
| #define PACKAGE "netcdf"
| #define VERSION "4.0-snapshot2007082102"
| #define USE_NETCDF4 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE $TEMP_LARGE
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:8724: result: cc -E
configure:8753: cc -E  conftest.c
configure:8759: $? = 0
configure:8790: cc -E  conftest.c
conftest.c:13:28: error: ac_nonexistent.h: No such file or directory
configure:8796: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0-snapshot2007082102"
| #define PACKAGE_STRING "netCDF 4.0-snapshot2007082102"
| #define PACKAGE_BUGREPORT "support@xxxxxxxxxxxxxxxx"
| #define PACKAGE "netcdf"
| #define VERSION "4.0-snapshot2007082102"
| #define USE_NETCDF4 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE $TEMP_LARGE
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:8834: checking for ANSI C header files
configure:8864: cc -c -g -O2  conftest.c >&5
configure:8870: $? = 0
configure:8969: cc -o conftest -g -O2   conftest.c  >&5
configure:8972: $? = 0
configure:8978: ./conftest
configure:8981: $? = 0
configure:8998: result: yes
configure:9022: checking for sys/types.h
configure:9043: cc -c -g -O2  conftest.c >&5
configure:9049: $? = 0
configure:9065: result: yes
configure:9022: checking for sys/stat.h
configure:9043: cc -c -g -O2  conftest.c >&5
configure:9049: $? = 0
configure:9065: result: yes
configure:9022: checking for stdlib.h
configure:9043: cc -c -g -O2  conftest.c >&5
configure:9049: $? = 0
configure:9065: result: yes
configure:9022: checking for string.h
configure:9043: cc -c -g -O2  conftest.c >&5
configure:9049: $? = 0
configure:9065: result: yes
configure:9022: checking for memory.h
configure:9043: cc -c -g -O2  conftest.c >&5
configure:9049: $? = 0
configure:9065: result: yes
configure:9022: checking for strings.h
configure:9043: cc -c -g -O2  conftest.c >&5
configure:9049: $? = 0
configure:9065: result: yes
configure:9022: checking for inttypes.h
configure:9043: cc -c -g -O2  conftest.c >&5
configure:9049: $? = 0
configure:9065: result: yes
configure:9022: checking for stdint.h
configure:9043: cc -c -g -O2  conftest.c >&5
configure:9049: $? = 0
configure:9065: result: yes
configure:9022: checking for unistd.h
configure:9043: cc -c -g -O2  conftest.c >&5
configure:9049: $? = 0
configure:9065: result: yes
configure:9081: checking for dlfcn.h
configure:9102: cc -c -g -O2  conftest.c >&5
configure:9108: $? = 0
configure:9124: result: yes
configure:9253: checking for C++ compiler version
configure:9260: c++ --version >&5
c++ (GCC) 4.2.1
Copyright (C) 2007 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:9263: $? = 0
configure:9270: c++ -v >&5
Using built-in specs.
Target: i686-pc-linux-gnu
Configured with: ../configure --prefix=/usr --enable-shared 
--enable-languages=c,c++,objc --enable-threads=posix --enable-__cxa_atexit 
--disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu 
--disable-libstdcxx-pch --with-tune=generic
Thread model: posix
gcc version 4.2.1
configure:9273: $? = 0
configure:9280: c++ -V >&5
c++: '-V' option must have argument
configure:9283: $? = 1
configure:9286: checking whether we are using the GNU C++ compiler
configure:9338: result: yes
configure:9343: checking whether c++ accepts -g
configure:9478: result: yes
configure:9503: checking dependency style of c++
configure:9593: result: gcc3
configure:9618: checking how to run the C++ preprocessor
configure:9654: c++ -E  conftest.cpp
configure:9660: $? = 0
configure:9691: c++ -E  conftest.cpp
conftest.cpp:24:28: error: ac_nonexistent.h: No such file or directory
configure:9697: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0-snapshot2007082102"
| #define PACKAGE_STRING "netCDF 4.0-snapshot2007082102"
| #define PACKAGE_BUGREPORT "support@xxxxxxxxxxxxxxxx"
| #define PACKAGE "netcdf"
| #define VERSION "4.0-snapshot2007082102"
| #define USE_NETCDF4 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE $TEMP_LARGE
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:9730: result: c++ -E
configure:9759: c++ -E  conftest.cpp
configure:9765: $? = 0
configure:9796: c++ -E  conftest.cpp
conftest.cpp:24:28: error: ac_nonexistent.h: No such file or directory
configure:9802: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0-snapshot2007082102"
| #define PACKAGE_STRING "netCDF 4.0-snapshot2007082102"
| #define PACKAGE_BUGREPORT "support@xxxxxxxxxxxxxxxx"
| #define PACKAGE "netcdf"
| #define VERSION "4.0-snapshot2007082102"
| #define USE_NETCDF4 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE $TEMP_LARGE
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:9953: checking for Fortran 77 compiler version
configure:9960: gfortran --version >&5
GNU Fortran (GCC) 4.2.1
Copyright (C) 2007 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:9963: $? = 0
configure:9970: gfortran -v >&5
Using built-in specs.
Target: i686-pc-linux-gnu
Configured with: ../configure --prefix=/usr --enable-shared 
--enable-languages=fortran --enable-threads=posix --enable-__cxa_atexit 
--disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu 
--with-tune=generic
Thread model: posix
gcc version 4.2.1
configure:9973: $? = 0
configure:9980: gfortran -V >&5
gfortran: '-V' option must have argument
configure:9983: $? = 1
configure:9991: checking whether we are using the GNU Fortran 77 compiler
configure:10033: result: yes
configure:10039: checking whether gfortran accepts -g
configure:10078: result: yes
configure:10221: checking for Fortran compiler version
configure:10228: gfortran --version >&5
GNU Fortran (GCC) 4.2.1
Copyright (C) 2007 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:10231: $? = 0
configure:10238: gfortran -v >&5
Using built-in specs.
Target: i686-pc-linux-gnu
Configured with: ../configure --prefix=/usr --enable-shared 
--enable-languages=fortran --enable-threads=posix --enable-__cxa_atexit 
--disable-multilib --libdir=/usr/lib --libexecdir=/usr/lib --enable-clocale=gnu 
--with-tune=generic
Thread model: posix
gcc version 4.2.1
configure:10241: $? = 0
configure:10248: gfortran -V >&5
gfortran: '-V' option must have argument
configure:10251: $? = 1
configure:10259: checking whether we are using the GNU Fortran compiler
configure:10301: result: yes
configure:10307: checking whether gfortran accepts -g
configure:10346: result: yes
configure:10426: checking for objdir
configure:10441: result: .libs
configure:10733: checking if cc supports -fno-rtti -fno-exceptions
configure:10751: cc -c -g -O2  -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not 
for C
configure:10755: $? = 0
configure:10768: result: no
configure:10788: checking for cc option to produce PIC
configure:11041: result: -fPIC -DPIC
configure:11053: checking if cc PIC flag -fPIC -DPIC works
configure:11071: cc -c -g -O2  -fPIC -DPIC -DPIC conftest.c >&5
configure:11075: $? = 0
configure:11088: result: yes
configure:11112: checking if cc static flag -static works
configure:11140: result: yes
configure:11155: checking if cc supports -c -o file.o
configure:11176: cc -c -g -O2  -o out/conftest2.o conftest.c >&5
configure:11180: $? = 0
configure:11202: result: yes
configure:11210: checking if cc supports -c -o file.o
configure:11257: result: yes
configure:11290: checking whether the cc linker (/usr/bin/ld) supports shared 
libraries
configure:12361: result: yes
configure:12398: checking whether -lc should be explicitly linked in
configure:12403: cc -c -g -O2  conftest.c >&5
configure:12406: $? = 0
configure:12421: cc -shared conftest.o  -v -Wl,-soname -Wl,conftest -o conftest 
2\>\&1 \| /bin/grep  -lc  \>/dev/null 2\>\&1
configure:12424: $? = 0
configure:12436: result: no
configure:12595: checking dynamic linker characteristics
configure:13206: result: GNU/Linux ld.so
configure:13301: checking how to hardcode library paths into programs
configure:13326: result: immediate
configure:14139: checking whether stripping libraries is possible
configure:14144: result: yes
configure:14179: checking if libtool supports shared libraries
configure:14181: result: yes
configure:14184: checking whether to build shared libraries
configure:14205: result: yes
configure:14208: checking whether to build static libraries
configure:14212: result: yes
configure:14361: checking for ld used by c++
configure:14428: result: /usr/bin/ld
configure:14437: checking if the linker (/usr/bin/ld) is GNU ld
configure:14452: result: yes
configure:14507: checking whether the c++ linker (/usr/bin/ld) supports shared 
libraries
configure:15496: result: yes
configure:15524: c++ -c -g -O2  conftest.cpp >&5
configure:15527: $? = 0
configure:15680: checking for c++ option to produce PIC
configure:15983: result: -fPIC -DPIC
configure:15992: checking if c++ PIC flag -fPIC -DPIC works
configure:16010: c++ -c -g -O2  -fPIC -DPIC -DPIC conftest.cpp >&5
configure:16014: $? = 0
configure:16027: result: yes
configure:16048: checking if c++ static flag -static works
configure:16076: result: yes
configure:16088: checking if c++ supports -c -o file.o
configure:16109: c++ -c -g -O2  -o out/conftest2.o conftest.cpp >&5
configure:16113: $? = 0
configure:16135: result: yes
configure:16140: checking if c++ supports -c -o file.o
configure:16187: result: yes
configure:16217: checking whether the c++ linker (/usr/bin/ld) supports shared 
libraries
configure:16242: result: yes
configure:16377: checking dynamic linker characteristics
configure:16988: result: GNU/Linux ld.so
configure:17032: checking how to hardcode library paths into programs
configure:17057: result: immediate
configure:17190: checking if libtool supports shared libraries
configure:17192: result: yes
configure:17195: checking whether to build shared libraries
configure:17215: result: yes
configure:17218: checking whether to build static libraries
configure:17222: result: yes
configure:17236: checking for gfortran option to produce PIC
configure:17489: result: -fPIC
configure:17498: checking if gfortran PIC flag -fPIC works
configure:17516: gfortran -c -g -O2 -fPIC conftest.f >&5
configure:17520: $? = 0
configure:17533: result: yes
configure:17554: checking if gfortran static flag -static works
configure:17582: result: yes
configure:17594: checking if gfortran supports -c -o file.o
configure:17615: gfortran -c -g -O2 -o out/conftest2.o conftest.f >&5
configure:17619: $? = 0
configure:17641: result: yes
configure:17646: checking if gfortran supports -c -o file.o
configure:17693: result: yes
configure:17723: checking whether the gfortran linker (/usr/bin/ld) supports 
shared libraries
configure:18774: result: yes
configure:18909: checking dynamic linker characteristics
configure:19520: result: GNU/Linux ld.so
configure:19564: checking how to hardcode library paths into programs
configure:19589: result: immediate
configure:19714: checking if libtool supports shared libraries
configure:19716: result: yes
configure:19719: checking whether to build shared libraries
configure:19739: result: yes
configure:19742: checking whether to build static libraries
configure:19746: result: yes
configure:19772: gfortran -c -g -O2  conftest.f >&5
configure:19775: $? = 0
configure:19884: checking for gfortran option to produce PIC
configure:20137: result: -fPIC
configure:20146: checking if gfortran PIC flag -fPIC works
configure:20164: gfortran -c -g -O2 -fPIC  conftest.f >&5
configure:20168: $? = 0
configure:20181: result: yes
configure:20202: checking if gfortran static flag -static works
configure:20230: result: yes
configure:20242: checking if gfortran supports -c -o file.o
configure:20263: gfortran -c -g -O2 -o out/conftest2.o  conftest.f >&5
configure:20267: $? = 0
configure:20289: result: yes
configure:20294: checking if gfortran supports -c -o file.o
configure:20341: result: yes
configure:20371: checking whether the gfortran linker (/usr/bin/ld) supports 
shared libraries
configure:21422: result: yes
configure:21557: checking dynamic linker characteristics
configure:22168: result: GNU/Linux ld.so
configure:22212: checking how to hardcode library paths into programs
configure:22237: result: immediate
configure:22284: finding other utilities
configure:22300: checking for a BSD-compatible install
configure:22356: result: /bin/install -c
configure:22422: trying to set flags for this platform
configure:22427: checking if _HPUX_SOURCE should be set
configure:22443: result: no
configure:22448: checking if Solaris -Xa option is needed
configure:22461: result: CFLAGS=-g -O2
configure:22487: checking if we need to set _LARGE_FILES despite results of 
previous tests
configure:22518: result: _LARGE_FILES=
configure:22528: checking for special C compiler options needed for large files
configure:22621: result: no
configure:22627: checking for _FILE_OFFSET_BITS value needed for large files
configure:22662: cc -c -g -O2  conftest.c >&5
conftest.c:31: warning: left shift count >= width of type
conftest.c:31: warning: left shift count >= width of type
conftest.c:33: error: size of array 'off_t_is_large' is negative
configure:22668: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0-snapshot2007082102"
| #define PACKAGE_STRING "netCDF 4.0-snapshot2007082102"
| #define PACKAGE_BUGREPORT "support@xxxxxxxxxxxxxxxx"
| #define PACKAGE "netcdf"
| #define VERSION "4.0-snapshot2007082102"
| #define USE_NETCDF4 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE $TEMP_LARGE
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <sys/types.h>
|  /* Check that off_t can represent 2**63 - 1 correctly.
|     We can't simply define LARGE_OFF_T to be 9223372036854775807,
|     since some C++ compilers masquerading as C compilers
|     incorrectly reject 9223372036854775807.  */
| #define LARGE_OFF_T (((off_t) 1 << 62) - 1 + ((off_t) 1 << 62))
|   int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721
|                      && LARGE_OFF_T % 2147483647 == 1)
|                     ? 1 : -1];
| int
| main ()
| {
| 
|   ;
|   return 0;
| }
configure:22712: cc -c -g -O2  conftest.c >&5
configure:22718: $? = 0
configure:22736: result: 64
configure:22872: displaying some results
configure:22878: checking CPPFLAGS
configure:22880: result: 
configure:22882: checking CC CFLAGS
configure:22884: result: cc -g -O2
configure:22887: checking type cc
configure:22889: result: cc is /usr/bin/cc
configure:22892: checking CXX
configure:22895: result: c++
configure:22897: checking CXXFLAGS
configure:22899: result: -g -O2
configure:22902: checking type c++
configure:22904: result: c++ is /usr/bin/c++
configure:22911: checking FC
configure:22914: result: gfortran
configure:22916: checking FFLAGS
configure:22918: result: -g -O2
configure:22921: checking type gfortran
configure:22923: result: gfortran is /usr/bin/gfortran
configure:22930: checking F90
configure:22945: result: unset
configure:22949: checking AR
configure:22952: result: ar
configure:22954: checking ARFLAGS
configure:22956: result: 
configure:22959: checking type ar
configure:22961: result: ar is /usr/bin/ar
configure:22968: checking NM
configure:22971: result: /usr/bin/nm -B
configure:22973: checking NMFLAGS
configure:22975: result: 
configure:24102: checking types, headers, and functions
configure:24106: checking for stdlib.h
configure:24111: result: yes
configure:24247: checking for sys/types.h
configure:24252: result: yes
configure:24394: checking for strlcat
configure:24450: cc -o conftest -g -O2   conftest.c  >&5
/tmp/ccUEtu6C.o: In function `main':
/home/ryuta/Development/src/netcdf-4.0-snapshot2007082102/conftest.c:60: 
undefined reference to `strlcat'
collect2: ld returned 1 exit status
configure:24456: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0-snapshot2007082102"
| #define PACKAGE_STRING "netCDF 4.0-snapshot2007082102"
| #define PACKAGE_BUGREPORT "support@xxxxxxxxxxxxxxxx"
| #define PACKAGE "netcdf"
| #define VERSION "4.0-snapshot2007082102"
| #define USE_NETCDF4 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE $TEMP_LARGE
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| /* end confdefs.h.  */
| /* Define strlcat to an innocuous variant, in case <limits.h> declares 
strlcat.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define strlcat innocuous_strlcat
| 
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char strlcat (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
| 
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 
| #undef strlcat
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char strlcat ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_strlcat || defined __stub___strlcat
| choke me
| #endif
| 
| int
| main ()
| {
| return strlcat ();
|   ;
|   return 0;
| }
configure:24474: result: no
configure:24394: checking for strerror
configure:24450: cc -o conftest -g -O2   conftest.c  >&5
configure:24456: $? = 0
configure:24474: result: yes
configure:24486: checking for working alloca.h
configure:24513: cc -o conftest -g -O2   conftest.c  >&5
configure:24519: $? = 0
configure:24536: result: yes
configure:24546: checking for alloca
configure:24593: cc -o conftest -g -O2   conftest.c  >&5
configure:24599: $? = 0
configure:24616: result: yes
configure:24849: checking for long long int
configure:24882: cc -o conftest -g -O2   conftest.c  >&5
configure:24888: $? = 0
configure:24933: cc -o conftest -g -O2   conftest.c  >&5
configure:24936: $? = 0
configure:24942: ./conftest
configure:24945: $? = 0
configure:24970: result: yes
configure:24981: checking for unsigned long long int
configure:25012: cc -o conftest -g -O2   conftest.c  >&5
configure:25018: $? = 0
configure:25035: result: yes
configure:25052: checking for struct stat.st_blksize
configure:25080: cc -c -g -O2  conftest.c >&5
configure:25086: $? = 0
configure:25143: result: yes
configure:25160: checking for IEEE floating point format
configure:25208: cc -o conftest -g -O2   conftest.c  >&5
configure:25211: $? = 0
configure:25217: ./conftest
configure:25220: $? = 0
configure:25235: result: yes
configure:25245: checking for size_t
configure:25275: cc -c -g -O2  conftest.c >&5
configure:25281: $? = 0
configure:25296: result: yes
configure:25308: checking for off_t
configure:25338: cc -c -g -O2  conftest.c >&5
configure:25344: $? = 0
configure:25359: result: yes
configure:25371: checking for ssize_t
configure:25401: cc -c -g -O2  conftest.c >&5
configure:25407: $? = 0
configure:25422: result: yes
configure:25432: checking for ptrdiff_t
configure:25462: cc -c -g -O2  conftest.c >&5
configure:25468: $? = 0
configure:25483: result: yes
configure:25493: checking for uchar
configure:25523: cc -c -g -O2  conftest.c >&5
conftest.c:68: error: expected '=', ',', ';', 'asm' or '__attribute__' before 
'ac__type_new_'
conftest.c: In function 'main':
conftest.c:72: error: 'ac__type_new_' undeclared (first use in this function)
conftest.c:72: error: (Each undeclared identifier is reported only once
conftest.c:72: error: for each function it appears in.)
conftest.c:72: error: expected expression before ')' token
configure:25529: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0-snapshot2007082102"
| #define PACKAGE_STRING "netCDF 4.0-snapshot2007082102"
| #define PACKAGE_BUGREPORT "support@xxxxxxxxxxxxxxxx"
| #define PACKAGE "netcdf"
| #define VERSION "4.0-snapshot2007082102"
| #define USE_NETCDF4 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE $TEMP_LARGE
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STRERROR 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_LONG_LONG_INT 1
| #define HAVE_UNSIGNED_LONG_LONG_INT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| typedef uchar ac__type_new_;
| int
| main ()
| {
| if ((ac__type_new_ *) 0)
|   return 0;
| if (sizeof (ac__type_new_))
|   return 0;
|   ;
|   return 0;
| }
configure:25544: result: no
configure:25559: checking whether char is unsigned
configure:25587: cc -c -g -O2  conftest.c >&5
configure:25593: $? = 0
configure:25608: result: no
configure:25617: checking whether byte ordering is bigendian
configure:25650: cc -c -g -O2  conftest.c >&5
configure:25656: $? = 0
configure:25688: cc -c -g -O2  conftest.c >&5
conftest.c: In function 'main':
conftest.c:42: error: 'not' undeclared (first use in this function)
conftest.c:42: error: (Each undeclared identifier is reported only once
conftest.c:42: error: for each function it appears in.)
conftest.c:42: error: expected ';' before 'big'
configure:25694: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0-snapshot2007082102"
| #define PACKAGE_STRING "netCDF 4.0-snapshot2007082102"
| #define PACKAGE_BUGREPORT "support@xxxxxxxxxxxxxxxx"
| #define PACKAGE "netcdf"
| #define VERSION "4.0-snapshot2007082102"
| #define USE_NETCDF4 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE $TEMP_LARGE
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STRERROR 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_LONG_LONG_INT 1
| #define HAVE_UNSIGNED_LONG_LONG_INT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h.  */
| #include <sys/types.h>
| #include <sys/param.h>
| 
| int
| main ()
| {
| #if BYTE_ORDER != BIG_ENDIAN
|  not big endian
| #endif
| 
|   ;
|   return 0;
| }
configure:25834: result: no
configure:25853: checking for short
configure:25883: cc -c -g -O2  conftest.c >&5
configure:25889: $? = 0
configure:25904: result: yes
configure:25911: checking size of short
configure:26213: cc -o conftest -g -O2   conftest.c  >&5
configure:26216: $? = 0
configure:26222: ./conftest
configure:26225: $? = 0
configure:26248: result: 2
configure:26258: checking for int
configure:26288: cc -c -g -O2  conftest.c >&5
configure:26294: $? = 0
configure:26309: result: yes
configure:26316: checking size of int
configure:26618: cc -o conftest -g -O2   conftest.c  >&5
configure:26621: $? = 0
configure:26627: ./conftest
configure:26630: $? = 0
configure:26653: result: 4
configure:26663: checking for long
configure:26693: cc -c -g -O2  conftest.c >&5
configure:26699: $? = 0
configure:26714: result: yes
configure:26721: checking size of long
configure:27023: cc -o conftest -g -O2   conftest.c  >&5
configure:27026: $? = 0
configure:27032: ./conftest
configure:27035: $? = 0
configure:27058: result: 4
configure:27068: checking for float
configure:27098: cc -c -g -O2  conftest.c >&5
configure:27104: $? = 0
configure:27119: result: yes
configure:27126: checking size of float
configure:27428: cc -o conftest -g -O2   conftest.c  >&5
configure:27431: $? = 0
configure:27437: ./conftest
configure:27440: $? = 0
configure:27463: result: 4
configure:27473: checking for double
configure:27503: cc -c -g -O2  conftest.c >&5
configure:27509: $? = 0
configure:27524: result: yes
configure:27531: checking size of double
configure:27833: cc -o conftest -g -O2   conftest.c  >&5
configure:27836: $? = 0
configure:27842: ./conftest
configure:27845: $? = 0
configure:27868: result: 8
configure:27878: checking for off_t
configure:27929: result: yes
configure:27936: checking size of off_t
configure:28238: cc -o conftest -g -O2   conftest.c  >&5
configure:28241: $? = 0
configure:28247: ./conftest
configure:28250: $? = 0
configure:28273: result: 8
configure:28283: checking for size_t
configure:28334: result: yes
configure:28341: checking size of size_t
configure:28643: cc -o conftest -g -O2   conftest.c  >&5
configure:28646: $? = 0
configure:28652: ./conftest
configure:28655: $? = 0
configure:28678: result: 4
configure:28777: checking for manual-page index command
configure:28779: result: 
configure:28782: checking binary distribution directory
configure:28790: result: /home/ftp/pub/binary/dummy_system
configure:28830: checking hdf5.h usability
configure:28847: cc -c -g -O2  -I/home/ryuta/Development/include conftest.c >&5
configure:28853: $? = 0
configure:28867: result: yes
configure:28871: checking hdf5.h presence
configure:28886: cc -E  -I/home/ryuta/Development/include conftest.c
configure:28892: $? = 0
configure:28906: result: yes
configure:28939: checking for hdf5.h
configure:28947: result: yes
configure:28965: checking for H5Fflush in -lhdf5
configure:29000: cc -o conftest -g -O2  -I/home/ryuta/Development/include  
-L/home/ryuta/Development/lib -L/lib conftest.c -lhdf5   -lm -lz -lhdf5 >&5
configure:29006: $? = 0
configure:29024: result: yes
configure:29045: checking for H5DSis_scale in -lhdf5_hl
configure:29080: cc -o conftest -g -O2  -I/home/ryuta/Development/include  
-L/home/ryuta/Development/lib -L/lib conftest.c -lhdf5_hl  -lhdf5  -lm -lz 
-lhdf5 >&5
configure:29086: $? = 0
configure:29104: result: yes
configure:29124: checking for H5Pget_fapl_mpiposix in -lhdf5
configure:29159: cc -o conftest -g -O2  -I/home/ryuta/Development/include  
-L/home/ryuta/Development/lib -L/lib conftest.c -lhdf5  -lhdf5_hl -lhdf5  -lm 
-lz -lhdf5 >&5
configure:29165: $? = 0
configure:29183: result: yes
configure:29198: checking for H5Pget_fapl_mpipo in -lhdf5
configure:29233: cc -o conftest -g -O2  -I/home/ryuta/Development/include  
-L/home/ryuta/Development/lib -L/lib conftest.c -lhdf5  -lhdf5_hl -lhdf5  -lm 
-lz -lhdf5 >&5
/tmp/cc2H41m7.o: In function `main':
/home/ryuta/Development/src/netcdf-4.0-snapshot2007082102/conftest.c:57: 
undefined reference to `H5Pget_fapl_mpipo'
collect2: ld returned 1 exit status
configure:29239: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.0-snapshot2007082102"
| #define PACKAGE_STRING "netCDF 4.0-snapshot2007082102"
| #define PACKAGE_BUGREPORT "support@xxxxxxxxxxxxxxxx"
| #define PACKAGE "netcdf"
| #define VERSION "4.0-snapshot2007082102"
| #define USE_NETCDF4 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE $TEMP_LARGE
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STRERROR 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_LONG_LONG_INT 1
| #define HAVE_UNSIGNED_LONG_LONG_INT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 4
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 4
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_LIBHDF5_HL 1
| #define USE_PARALLEL_POSIX 1
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Pget_fapl_mpipo ();
| int
| main ()
| {
| return H5Pget_fapl_mpipo ();
|   ;
|   return 0;
| }
configure:29257: result: no
configure:29282: checking for H5Pset_deflate in -lhdf5
configure:29317: cc -o conftest -g -O2  -I/home/ryuta/Development/include  
-L/home/ryuta/Development/lib -L/lib conftest.c -lhdf5  -lhdf5_hl -lhdf5  -lm 
-lz -lhdf5 >&5
configure:29323: $? = 0
configure:29341: result: yes
configure:29378: generating header files and makefiles
configure:29448: updating cache config.cache
configure:29680: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by netCDF config.status 4.0-snapshot2007082102, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on oroppas

config.status:1094: creating Makefile
config.status:1094: creating man/Makefile
config.status:1094: creating man4/Makefile
config.status:1094: creating fortran/Makefile
config.status:1094: creating libsrc/Makefile
config.status:1094: creating libsrc4/Makefile
config.status:1094: creating nctest/Makefile
config.status:1094: creating nc_test4/Makefile
config.status:1094: creating nc_test/Makefile
config.status:1094: creating ncdump/Makefile
config.status:1094: creating ncgen/Makefile
config.status:1094: creating nf_test/Makefile
config.status:1094: creating cxx/Makefile
config.status:1094: creating cxx4/Makefile
config.status:1094: creating f90/Makefile
config.status:1094: creating examples/Makefile
config.status:1094: creating examples/C/Makefile
config.status:1094: creating examples/CDL/Makefile
config.status:1094: creating examples/CXX/Makefile
config.status:1094: creating examples/CXX4/Makefile
config.status:1094: creating examples/F90/Makefile
config.status:1094: creating examples/F77/Makefile
config.status:1094: creating win32/Makefile
config.status:1094: creating win32/NET/Makefile
config.status:1094: creating win32/NET/libsrc/Makefile
config.status:1094: creating win32/NET/ncdump/Makefile
config.status:1094: creating win32/NET/ncgen/Makefile
config.status:1094: creating win32/NET/examples/Makefile
config.status:1094: creating win32/NET/nctest/Makefile
config.status:1094: creating win32/NET/nc_test/Makefile
config.status:1094: creating config.h
config.status:1094: creating fortran/nfconfig1.inc
config.status:1388: executing depfiles commands
config.status:1388: executing libtool commands

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=i686-pc-linux-gnu
ac_cv_c_bigendian=no
ac_cv_c_char_unsigned=no
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_ieeefloat=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=yes
ac_cv_fc_compiler_gnu=yes
ac_cv_func_alloca_works=yes
ac_cv_func_strerror=yes
ac_cv_func_strlcat=no
ac_cv_header_dlfcn_h=yes
ac_cv_header_hdf5_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=i686-pc-linux-gnu
ac_cv_lib_hdf5_H5Fflush=yes
ac_cv_lib_hdf5_H5Pget_fapl_mpipo=no
ac_cv_lib_hdf5_H5Pget_fapl_mpiposix=yes
ac_cv_lib_hdf5_H5Pset_deflate=yes
ac_cv_lib_hdf5_hl_H5DSis_scale=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/bin/install -c'
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='cc -E'
ac_cv_prog_CXXCPP='c++ -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=cc
ac_cv_prog_ac_ct_CXX=c++
ac_cv_prog_ac_ct_F77=gfortran
ac_cv_prog_ac_ct_FC=gfortran
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_cc_c_o=yes
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_f77_g=yes
ac_cv_prog_f90_uppercase_mod=no
ac_cv_prog_fc_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_sizeof_double=8
ac_cv_sizeof_float=4
ac_cv_sizeof_int=4
ac_cv_sizeof_long=4
ac_cv_sizeof_off_t=8
ac_cv_sizeof_short=2
ac_cv_sizeof_size_t=4
ac_cv_sys_file_offset_bits=64
ac_cv_sys_largefile_CC=no
ac_cv_type_double=yes
ac_cv_type_float=yes
ac_cv_type_int=yes
ac_cv_type_long=yes
ac_cv_type_long_long_int=yes
ac_cv_type_off_t=yes
ac_cv_type_ptrdiff_t=yes
ac_cv_type_short=yes
ac_cv_type_size_t=yes
ac_cv_type_ssize_t=yes
ac_cv_type_uchar=no
ac_cv_type_unsigned_long_long_int=yes
ac_cv_working_alloca_h=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX=/usr/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_F77=yes
lt_cv_prog_compiler_c_o_FC=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[      
]\([ABCDGIRSTW][ABCDGIRSTW]*\)[         ][      
]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/  
{\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/  
{"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int 
\1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=32768

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} 
/home/ryuta/Development/src/netcdf-4.0-snapshot2007082102/missing --run 
aclocal-1.9'
ALLOCA=''
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} 
/home/ryuta/Development/src/netcdf-4.0-snapshot2007082102/missing --run tar'
AR='ar'
AS='as'
AUTOCONF='${SHELL} 
/home/ryuta/Development/src/netcdf-4.0-snapshot2007082102/missing --run 
autoconf'
AUTOHEADER='${SHELL} 
/home/ryuta/Development/src/netcdf-4.0-snapshot2007082102/missing --run 
autoheader'
AUTOMAKE='${SHELL} 
/home/ryuta/Development/src/netcdf-4.0-snapshot2007082102/missing --run 
automake-1.9'
AWK='gawk'
BUILD_BENCHMARKS_FALSE=''
BUILD_BENCHMARKS_TRUE='#'
BUILD_CXX4_FALSE='#'
BUILD_CXX4_TRUE=''
BUILD_CXX_FALSE='#'
BUILD_CXX_TRUE=''
BUILD_C_FALSE='#'
BUILD_C_TRUE=''
BUILD_DLL_FALSE=''
BUILD_DLL_TRUE='#'
BUILD_EXAMPLES_FALSE='#'
BUILD_EXAMPLES_TRUE=''
BUILD_F77_FALSE=''
BUILD_F77_TRUE='#'
BUILD_F90_FALSE=''
BUILD_F90_TRUE='#'
BUILD_SEPARATE_FORTRAN_FALSE='#'
BUILD_SEPARATE_FORTRAN_TRUE=''
BUILD_SHARED_FALSE='#'
BUILD_SHARED_TRUE=''
BUILD_UTILITIES_FALSE='#'
BUILD_UTILITIES_TRUE=''
BUILD_V2_FALSE='#'
BUILD_V2_TRUE=''
CC='cc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2'
CPP='cc -E'
CPPFLAGS=' -I/home/ryuta/Development/include'
CXX='c++'
CXXCPP='c++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DLLTOOL='dlltool'
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
EXTRA_EXAMPLE_TESTS_FALSE='#'
EXTRA_EXAMPLE_TESTS_TRUE=''
F77='gfortran'
FC='gfortran'
FCFLAGS='-g -O2'
FCFLAGS_f90=''
FFLAGS='-g -O2'
FGREP='/bin/grep -F'
FTPBINDIR='/home/ftp/pub/binary/dummy_system'
GREP='/bin/grep'
HDF5DIR='/home/ryuta/Development'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_DOCS_FALSE=''
INSTALL_DOCS_TRUE='#'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s'
LARGE_FILE_TESTS_FALSE=''
LARGE_FILE_TESTS_TRUE='#'
LD='/usr/bin/ld'
LDFLAGS=''
LIBOBJS=''
LIBS=''
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LN_S='ln -s'
LTLIBOBJS=''
MAKEINFO='${SHELL} 
/home/ryuta/Development/src/netcdf-4.0-snapshot2007082102/missing --run 
makeinfo'
MAKEWHATIS_CMD=''
MOD_FLAG=''
NETCDF_C_LIB=''
NM='/usr/bin/nm -B'
NMFLAGS=''
OBJDUMP='objdump'
OBJEXT='o'
PACKAGE='netcdf'
PACKAGE_BUGREPORT='support@xxxxxxxxxxxxxxxx'
PACKAGE_NAME='netCDF'
PACKAGE_STRING='netCDF 4.0-snapshot2007082102'
PACKAGE_TARNAME='netcdf'
PACKAGE_VERSION='4.0-snapshot2007082102'
PATH_SEPARATOR=':'
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHAREEXT='so'
SHELL='/bin/sh'
STRIP='strip'
SZLIBDIR=''
TEST_F77_FALSE=''
TEST_F77_TRUE='#'
TEST_PARALLEL_FALSE='#'
TEST_PARALLEL_TRUE=''
UPPER_CASE_MOD_FALSE=''
UPPER_CASE_MOD_TRUE='#'
USE_FFIO_FALSE=''
USE_FFIO_TRUE='#'
USE_HDF5_DIR_FALSE='#'
USE_HDF5_DIR_TRUE=''
USE_NETCDF4_FALSE='#'
USE_NETCDF4_TRUE=''
USE_NETCDF_C_LIB_DIR_FALSE=''
USE_NETCDF_C_LIB_DIR_TRUE='#'
USE_SZLIB_DIR_FALSE=''
USE_SZLIB_DIR_TRUE='#'
USE_ZLIB_DIR_FALSE=''
USE_ZLIB_DIR_TRUE='#'
VERSION='4.0-snapshot2007082102'
WHATIS='whatis'
ZLIBDIR=''
ac_ct_CC='cc'
ac_ct_CXX='c++'
ac_ct_DUMPBIN=''
ac_ct_F77='gfortran'
ac_ct_FC='gfortran'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='i686-pc-linux-gnu'
build_alias=''
build_cpu='i686'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='i686-pc-linux-gnu'
host_alias=''
host_cpu='i686'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='/home/ryuta/Development/src/netcdf-4.0-snapshot2007082102/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
lt_ECHO='echo'
mandir='${datarootdir}/man'
mkdir_p='mkdir -p --'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/home/ryuta/Development'
prog=''
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define PACKAGE_NAME "netCDF"
#define PACKAGE_TARNAME "netcdf"
#define PACKAGE_VERSION "4.0-snapshot2007082102"
#define PACKAGE_STRING "netCDF 4.0-snapshot2007082102"
#define PACKAGE_BUGREPORT "support@xxxxxxxxxxxxxxxx"
#define PACKAGE "netcdf"
#define VERSION "4.0-snapshot2007082102"
#define USE_NETCDF4 1
#define USE_EXTREME_NUMBERS 1
#define TEMP_LARGE $TEMP_LARGE
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define _FILE_OFFSET_BITS 64
#define HAVE_STRERROR 1
#define HAVE_ALLOCA_H 1
#define HAVE_ALLOCA 1
#define HAVE_LONG_LONG_INT 1
#define HAVE_UNSIGNED_LONG_LONG_INT 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_ST_BLKSIZE 1
#define HAVE_SSIZE_T 1
#define HAVE_PTRDIFF_T 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_LONG 4
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_OFF_T 8
#define SIZEOF_SIZE_T 4
#define HAVE_HDF5_H 1
#define HAVE_LIBHDF5 1
#define HAVE_LIBHDF5_HL 1
#define USE_PARALLEL_POSIX 1
#define USE_PARALLEL 1
#define USE_ZLIB 1

configure: exit 0